ID   HM209069; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM209069;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate SDJNiR15 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (08-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 29b95dc30191a59968b3531e8d786279.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="rice"
FT                   /isolate="SDJNiR15"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N7C5"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N7C5"
FT                   /protein_id="ADI33261.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSTSSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATNTSTTVKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVVNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 577 A; 335 C; 323 G; 566 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt tgaacaaccg accaacaatc       120
     actctgctat ctcatttcaa caatctattt catgaattaa acattgtcaa atcgccccac       180
     gttgcatctt cccaaactac cgttaatttg tacattcgta agcatttgtt gacccgactt       240
     catgatagac tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagac       300
     catattcgta gcttctttca aaatgaacac caacctattt tccagaccct gacgaacaac       360
     gacctaagtg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgta caaattgaga ccctaactga aggaaacatt       480
     actttgaagc ctttttccgc tgatggttta gaagtcattc tcgatgatag ctatattggt       540
     atagttggta aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa       600
     gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg tactggtaaa       660
     ttaagaattg atggtggtta cgattttaat tgtcctgcaa gcactacgga tgttacccat       720
     tacggtggtt atgaccaatt ttcacgtcaa atgttcgaac gtttgaatct attttataat       780
     attagcctta gcataatccc cgtttcagct ttgaaaacag ttcatttatt cgaaaaagaa       840
     ttaagtgttt tggatgcaga caaatcttta ctcgaacaga cttggagcgc agtagcgtca       900
     tttgttgaaa cctggcaagt taaatctaaa gttaaagctg atgatcctga tgaatacgaa       960
     ctgaccagtt tgtccacttt gcgtactaat tatgatggta cttctacttc tagccctttt      1020
     acagataaga aattcattga ctggtatatt aagacttttt ctaagactga aaaaggatcg      1080
     tctttacgtc gaaatgaatt agaagagaaa agtgccacta atacttcaac tacagtaaag      1140
     aaggttaaaa ttcatttctc tgttcaatat tttgacgaat ttaaagttaa tggacacgaa      1200
     aaaagcattg tagttcaaac tcataaaggt gaaatgacat tagattatta tcgtaaaatt      1260
     ggcgaagtat taagtgcgat ttggaaacgt ggtaaatctt tggctgtacc ttgttttgat      1320
     tacattaaac ttggcgttga aaaagcattt catttggcac ccgtaattat gaagaagtat      1380
     aacttgacga tcgacgatat tatcaacttc attgataaag gaccttccta tttggctaag      1440
     ttggacaaaa ttgatgattg gtctctaatt tcaaagctta ttattaccag tgttttacct      1500
     aacattattc aagctgttta taaaaccgat ccaagtaata atgttgtgaa ctcagtaatt      1560
     atcagtagag cgaacaactt gttgaaatct gatagggaca ggctattaaa gaaggcactt      1620
     tccgccaacg tttcttcctc caatacttct agtcatgagc atacacagaa gatagtatta      1680
     aacaaagtga caagatgacc actggaagta catcattagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//