ID HM195287; SV 1; linear; genomic RNA; STD; VRL; 2770 BP. XX AC HM195287; XX DT 29-DEC-2010 (Rel. 107, Created) DT 23-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Tobacco rattle virus RNA 2 variant AL3`PE-c coat protein and 2b protein DE genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-2770 RX DOI; 10.1099/vir.0.028803-0. RX PUBMED; 21169212. RA Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.; RT "Deletions and recombinations with the RNA1 3' ends of different RT tobraviruses have created a multitude of tobacco rattle virus TCM-related RT RNA2 species in Alstroemeria and tulip"; RL J. Gen. Virol. 92(Pt 4):988-996(2011). XX RN [2] RP 1-2770 RA Koenig R.; RT ; RL Submitted (03-MAY-2010) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; e5f34b1eb6c1f6e47b1e2f39cd7b5089. XX FH Key Location/Qualifiers FH FT source 1..2770 FT /organism="Tobacco rattle virus" FT /segment="2" FT /host="Alstroemeria" FT /strain="AL" FT /mol_type="genomic RNA" FT /note="RNA 2 variant AL3`PE-c" FT /db_xref="taxon:12295" FT CDS 524..1135 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6EHZ8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q6EHZ8" FT /protein_id="ADU05350.1" FT /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR FT DMIPGIVEDLSTEIPVDENTRFPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN FT PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS FT RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT" FT CDS 1258..2025 FT /codon_start=1 FT /product="2b protein" FT /note="nematode transmission helper" FT /db_xref="GOA:E7CKZ3" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:E7CKZ3" FT /protein_id="ADU05351.1" FT /translation="MGNGDWSSKWPNDHLFIDDFGKLVWFDVLTDIVKISHFVSQVPTD FT LSPIPSSYISFIDGRIPMCINHLGWVYIRVKFESEEVFYQKFGEVDVSRFGESELPPDF FT EVTFSKVTTLVDKSLVRKSELLEKMNNELKQELTNKLDSLEKVNVQLKKELSQAQQSNF FT TELRDGLILNFSKVGGRIHRMVVRSIQNQLKLVSEINNDGDRWATMGATVILKEGAQYL FT GFVVVKNDGKIGVKFDLTRLNSLDNQTLLASVV" XX SQ Sequence 2770 BP; 762 A; 459 C; 675 G; 874 T; 0 other; tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca agttggagaa 60 cgcggtagaa cgtacttatc cgatacagcc tttatccctt tgttgagagg tttttctcaa 120 ctgcaccgaa attctggatt tagttggtcg ctagaagact gaaggaatgt aggtgtattt 180 ttagatagtt aataagtatc ttctcaaata ccataaacct gagacgcatc gcttgcgaaa 240 gtagcattaa aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt 300 cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct gttcggggtt 360 tcacactatc ttaagagaaa gtgttaaaat agtgagaata ttctcactat gagcataatt 420 atactggtta tcctctcgct gatagagact atcattctta aaatcacttt gaaaggtagt 480 cttgttgata cacaggttgc tttatcactt gcactactta cttatggcag gtagttatgg 540 ggaaacgttc gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa 600 ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg cagacagaga 660 tatgatccct ggaattgttg aggatctgag tacggaaata ccagttgatg aaaacacgag 720 gtttcctagt gggaaagtgt atcaccttct gaccaaggaa atgttgatgg cgatcgaagc 780 tatccatgcg gcttcgtcgt tcaaaagaag agccgaggag aaaaataatg tcaatccgag 840 acagagattt gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag 900 acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga atagtaaatt 960 agatgacgcc agtacggcct ttcataagag tttagctact cttaagggaa gtcgtccaaa 1020 ggcggttgtc cagcgcactt tcgaaaaaga gtatagtttg aggtggacgg ctgctgctcc 1080 ggtcgctgct gctggtggaa caccaccagg tggaggtcgt ggacctggaa cctagtttga 1140 atactagatt tcgataatga cagcaattgt cattttagaa acggttttgc tacttgattt 1200 ggtttaatcc tttgacatgg gtcgcaggtg gcatagtaat tgtaaaattt cttctttatg 1260 ggcaacggag attggtcttc aaagtggcct aacgatcact tgttcataga tgatttcgga 1320 aagttggttt ggttcgatgt actgactgac atagttaaga tctctcattt cgtttcacag 1380 gtaccaaccg atttgtctcc aattccgagc tcctatatta gcttcatcga tggtcgaatt 1440 cccatgtgta tcaatcacct aggttgggtg tatatacgtg ttaaatttga gtctgaggaa 1500 gtattttatc agaagttcgg tgaggtagat gttagtaggt tcggcgagtc ggaacttcct 1560 ccggatttcg aagtcacttt cagtaaggtg actacgctgg tggataagtc cttggtgcga 1620 aaaagcgagc ttctcgaaaa gatgaacaat gaactcaaac aggaattaac taacaagctt 1680 gattcgctgg aaaaggtaaa tgttcagtta aagaaggaac ttagtcaagc gcaacaaagt 1740 aatttcactg aattgcgcga cgggttgatc ttaaactttt caaaagttgg cgggagaatc 1800 catcgtatgg ttgttagatc catccaaaat cagcttaagc ttgtttcgga gatcaataat 1860 gatggtgaca ggtgggctac aatgggagct acggtaattc taaaggaagg agctcagtat 1920 ttagggtttg ttgttgtaaa gaatgatggg aaaatcggtg tcaaattcga tttaaccagg 1980 ttaaattctt tggataacca aactttgctg gcgtctgtgg tttaatatgt tgtaggttta 2040 aactcttttt gagcggggcg tgaaagtcgt ccggtggatc gtaccttatc gatttctgtt 2100 gtaggaagca gataaaataa ttcctgtagc tacgtctcac gtagggtggt tgttaccata 2160 aacaataatg tcgttggttg catttaaaat aattccattg actgactttg gtatgggtcg 2220 aatctattag taggttcgtt gtgtacaaag ataatgggag cttctggaaa cagaagttga 2280 taagaaccgt atcagtggac caggcttttc tactgttgcg aggaccagag tcattatctc 2340 agtttgttaa ggagtatggg gtacatgtct actccccctt ttatacttct gatctgtggg 2400 aagatatggc taaggacagt gtctttggtt cgacgtactc tacctcatct tctttctgat 2460 ttatgagacg ggagtctttt taacaacttt aaacctatta ctggttaaaa tttgttttgt 2520 attttgtgtt atttgtttaa catttgtgtt atgctatttg tttgtgtatg agctaggtat 2580 tggttaattc catgcttaag tggttctacc gtagggacga tagtttgtta ttattattat 2640 tttaagtttg atttgtgaaa atcttctact ttctgaaaag gtcgttgacc aagagaaagt 2700 gggagggtga gtaagtactc ttgaagtggt gatggttaca aggcatagaa gggttaaacc 2760 cttccgccta 2770 //