ID HM195286; SV 1; linear; genomic RNA; STD; VRL; 3101 BP. XX AC HM195286; XX DT 29-DEC-2010 (Rel. 107, Created) DT 23-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Tobacco rattle virus RNA 2 variant AL3`PE-b coat protein, 2b protein, and DE 2c protein genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3101 RX DOI; 10.1099/vir.0.028803-0. RX PUBMED; 21169212. RA Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.; RT "Deletions and recombinations with the RNA1 3' ends of different RT tobraviruses have created a multitude of tobacco rattle virus TCM-related RT RNA2 species in Alstroemeria and tulip"; RL J. Gen. Virol. 92(Pt 4):988-996(2011). XX RN [2] RP 1-3101 RA Koenig R.; RT ; RL Submitted (03-MAY-2010) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; 686efcf0340668bc2aee5b74edd010bb. XX FH Key Location/Qualifiers FH FT source 1..3101 FT /organism="Tobacco rattle virus" FT /segment="2" FT /host="Alstroemeria" FT /strain="AL" FT /mol_type="genomic RNA" FT /note="RNA 2 variant AL3`PE-b" FT /db_xref="taxon:12295" FT CDS 524..1135 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6EHZ8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q6EHZ8" FT /protein_id="ADU05347.1" FT /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR FT DMIPGIVEDLSTEIPVDENTRFPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN FT PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS FT RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT" FT CDS 1258..2025 FT /codon_start=1 FT /product="2b protein" FT /note="functions in nematode transmission" FT /db_xref="GOA:E7CKZ6" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:E7CKZ6" FT /protein_id="ADU05348.1" FT /translation="MGNGDWSSKWPNDHLFIDDFGKLVWFDVLTDIVKISHFVSQAPTD FT LSPIPSSYISFIDGRIPMCINHLGWVYIRVKFESEEVFYRKFGEVDVSRFGESELPPDF FT EVTFSKVTTLVDKSLVRKSELLEKMNNELKQELTNKLDSLEKVNVQLKKELSQAQQSNF FT TELRDGLILNFSKVGGRIHRMVVRSIQNQLKLVSEINNDGDRWATMGATVILKEGAQYL FT GFVVVKNDGKIGVKFDLTRLNSLDNQTLLASVV" FT CDS 2215..2790 FT /codon_start=1 FT /product="2c protein" FT /db_xref="GOA:E7CKZ7" FT /db_xref="UniProtKB/TrEMBL:E7CKZ7" FT /protein_id="ADU05349.1" FT /translation="MGNVCRAFLISLTPQFTFSIEFDGKNFLSNAGSSIGYASGSIVVI FT GPAFDTEVTLEKYLQLLKVKPRMIRAVPIPIVALVISIISMLVAVVNTILGALSRFVPV FT EAVTLVWVESISRFVVYKDNGSFWKQKLIRTVSVDQAFLLLRGPESLSQFVKEYGVHVY FT SPFYTSDLWEDMAKDSVFGSTYSTSSSF" XX SQ Sequence 3101 BP; 839 A; 529 C; 759 G; 974 T; 0 other; tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca agttggagaa 60 cgcggtagaa cgtacttatc cgacacagcc tttatccctt tgttgagagg tttttctcaa 120 ctgcaccgaa attctggatt tagttggtcg ctagaagact gaaggaatgt aggtgtattt 180 ttagatagtt aataagtatc ttctcaaata ccataaacct gagacgcatc gcttgcgaaa 240 gtagcattaa aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt 300 cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct gttcggggtt 360 tcacactatc ttaagagaaa gtgttaaaat agtgagaata ttctcactat gagcataatt 420 atactggtta tcctctcgct gatagagact atcattctta aaatcacttt gaaaggtagt 480 cttgttgata cacaggttgc tttatcactt gcactactta cttatggcag gtagttatgg 540 ggaaacgttc gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa 600 ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg cagacagaga 660 tatgatccct ggaattgttg aggatctgag tacggaaata ccagttgatg aaaacacgag 720 gtttcctagt gggaaagtgt atcaccttct gaccaaggaa atgttgatgg cgatcgaagc 780 tatccatgcg gcttcgtcgt tcaaaagaag agccgaggag aaaaataatg tcaatccgag 840 acagagattt gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag 900 acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga atagtaaatt 960 agatgacgcc agtacggcct ttcataagag tttagctact cttaagggaa gtcgtccaaa 1020 ggcggttgtc cagcgcactt tcgaaaaaga gtatagtttg aggtggacgg ctgctgctcc 1080 ggtcgctgct gctggtggaa caccaccagg tggaggtcgt ggacctggaa cctagtttga 1140 atactagatt tcgataatga cagcaattgt cattttagaa acggttttgc tacttgattt 1200 ggtttaatcc tttgacatgg gtcgcaggtg gcatagtaat tgtaaaattt cttctttatg 1260 ggcaacggag attggtcttc aaagtggcct aacgatcact tgttcataga tgatttcgga 1320 aagttggttt ggttcgatgt actgactgac atagttaaga tctctcattt cgtttcacag 1380 gcaccaaccg atttgtctcc aattccgagc tcctatatta gcttcatcga tggtcgaatt 1440 cccatgtgta tcaatcacct aggttgggtg tatatacgtg ttaaatttga gtctgaggaa 1500 gtattttatc ggaagttcgg tgaggtagat gttagtaggt tcggcgagtc ggaacttcct 1560 ccggatttcg aagtcacttt cagtaaggtg actacgctgg tggataagtc cttggtgcga 1620 aaaagcgagc ttctcgaaaa gatgaacaat gaactcaaac aggaattaac taacaagctt 1680 gattcgctgg aaaaggtaaa tgttcagtta aagaaggaac ttagtcaagc gcaacaaagt 1740 aatttcactg aattgcgcga cgggttgatc ttaaactttt caaaagttgg cgggagaatc 1800 catcgtatgg ttgtcagatc catccaaaat cagcttaagc tcgtttcgga gatcaataat 1860 gatggtgaca ggtgggctac aatgggagct acggtaattc taaaggaagg agctcagtat 1920 ttagggtttg ttgttgtaaa gaatgatggg aaaatcggtg tcaaattcga tttaaccagg 1980 ttaaattctt tggataacca aactttgctg gcgtctgtgg tttaatatgt tgtaggttta 2040 aactcttttt gagcggggcg tgaaagtcgt ccggtggatc gtaccttatc gatttctgtt 2100 gtaggaagca gataaaataa ttcctgtagc tacgtctcac gtagggtggt tgttaccata 2160 aacaataatg tcgttggttg catttaaaat aattccattg accgatattc tatcatggga 2220 aacgtctgca gggcgttctt gataagctta actccgcagt ttacattttc aattgagttc 2280 gacggaaaga atttcttgtc taacgctggt agctcaatcg gatatgctag cggctcgata 2340 gtagttatcg gacctgcttt tgatacagag gttacactcg aaaagtatct tcaattgcta 2400 aaagtcaagc ctcggatgat acgagctgta ccgatcccga tcgttgcttt agtgatttcg 2460 atcatttcga tgctagtggc tgtggtgaac actattctgg gtgctttgtc acgatttgtg 2520 ccggtggagg cagtgacttt ggtatgggtc gaatctatta gtaggttcgt tgtgtacaaa 2580 gataatggga gcttctggaa acagaagttg ataagaaccg tatcagtgga ccaggctttt 2640 ctactgttgc gaggaccaga gtcattatct cagtttgtta aggagtatgg ggtacatgtc 2700 tactccccct tttatacttc tgatctgtgg gaagatatgg ctaaggacag tgtctttggt 2760 tcgacgtact ctacctcatc ttctttctga tttatgagac gggagtcttt ttaacaactt 2820 taaacctatt actggttaaa atttgttttg tattttgtgt tatttgttta acatttgtgt 2880 tatgctattt gtttgtgtat gagctaggta ttggttaatt ccatgcttaa gtggttctac 2940 cgtagggacg atagtttgtt attattatta ttttaagttt gatttgtgaa aatcttctac 3000 tttctgaaaa ggtcgttgac caagagaaag tgggagggtg agtaagtact cttgaagtgg 3060 tgatggttac aaggcataga agggttaaac ccttccgcct a 3101 //