Dbfetch
ID HM195285; SV 1; linear; genomic RNA; STD; VRL; 3407 BP. XX AC HM195285; XX DT 29-DEC-2010 (Rel. 107, Created) DT 23-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Tobacco rattle virus RNA 2 variant AL3`PE-a coat protein, 2b protein, and DE 2c protein genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3407 RX DOI; 10.1099/vir.0.028803-0. RX PUBMED; 21169212. RA Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.; RT "Deletions and recombinations with the RNA1 3' ends of different RT tobraviruses have created a multitude of tobacco rattle virus TCM-related RT RNA2 species in Alstroemeria and tulip"; RL J. Gen. Virol. 92(Pt 4):988-996(2011). XX RN [2] RP 1-3407 RA Koenig R.; RT ; RL Submitted (03-MAY-2010) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; 5c5813c0956746f26a989395b987cafe. XX FH Key Location/Qualifiers FH FT source 1..3407 FT /organism="Tobacco rattle virus" FT /segment="2" FT /host="Alstroemeria" FT /strain="AL" FT /mol_type="genomic RNA" FT /note="RNA 2 variant AL3`PE-a" FT /db_xref="taxon:12295" FT CDS 524..1135 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6EHZ8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q6EHZ8" FT /protein_id="ADU05344.1" FT /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR FT DMIPGIVEDLSTEIPVDENTRFPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN FT PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS FT RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT" FT CDS 1258..2025 FT /codon_start=1 FT /product="2b protein" FT /note="functions in nematode transmission" FT /db_xref="GOA:E7CKZ3" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:E7CKZ3" FT /protein_id="ADU05345.1" FT /translation="MGNGDWSSKWPNDHLFIDDFGKLVWFDVLTDIVKISHFVSQVPTD FT LSPIPSSYISFIDGRIPMCINHLGWVYIRVKFESEEVFYQKFGEVDVSRFGESELPPDF FT EVTFSKVTTLVDKSLVRKSELLEKMNNELKQELTNKLDSLEKVNVQLKKELSQAQQSNF FT TELRDGLILNFSKVGGRIHRMVVRSIQNQLKLVSEINNDGDRWATMGATVILKEGAQYL FT GFVVVKNDGKIGVKFDLTRLNSLDNQTLLASVV" FT CDS 2215..3096 FT /codon_start=1 FT /product="2c protein" FT /db_xref="GOA:E7CKZ4" FT /db_xref="UniProtKB/TrEMBL:E7CKZ4" FT /protein_id="ADU05346.1" FT /translation="MGNVCRAFLISLTPQVTFSIEFDGKNFLSNAGSSIGYDDNVPKIG FT NWLVVYCHWWPDGSITLRLSARSHGVDVGKSCTFGAYGRGRHRFQLNRGETLVNSVAYK FT TVNFEGDFRVRVLDSSPFVIDFQSIFSPKLVKFANASGSIVVIGPAFDTEVTLEKYLQL FT LKVKPRMIRAVPIPIVALVISIISMLVAVVNTILGALSRFVPVEAVTLVWVESISRFVV FT YKDNGSFWKQKLIRTVSVDQAFLLLRGPESLSQFVKEYGVHVYSPFYTSDLWEDMAKDS FT VFGSTYSTSSSF" XX SQ Sequence 3407 BP; 913 A; 582 C; 839 G; 1073 T; 0 other; tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca agttggagaa 60 cgcggtagaa cgtacttatc cgatacagcc tttatccctt tgttgagagg tttttctcaa 120 ctgcaccgaa attctggatt tagttggtcg ctagaagact gaaggaatgt aggtgtattt 180 ttagatagtt aataagtatc ttctcaaata ccataaacct gagacgcatc gcttgcgaaa 240 gtagcattaa aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt 300 cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct gttcggggtt 360 tcacactatc ttaagagaaa gtgttaaaat agtgagaata ttctcactat gagcataatt 420 atactggtta tcctctcgct gatagagact atcattctta aaatcacttt gaaaggtagt 480 cttgttgata cacaggttgc tttatcactt gcactactta cttatggcag gtagttatgg 540 ggaaacgttc gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa 600 ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg cagacagaga 660 tatgatccct ggaattgttg aggatctgag tacggaaata ccagttgatg aaaacacgag 720 gtttcctagt gggaaagtgt atcaccttct gaccaaggaa atgttgatgg cgatcgaagc 780 tatccatgcg gcttcgtcgt tcaaaagaag agccgaggag aaaaataatg tcaatccgag 840 acagagattt gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag 900 acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga atagtaaatt 960 agatgacgcc agtacggcct ttcataagag tttagctact cttaagggaa gtcgtccaaa 1020 ggcggttgtc cagcgcactt tcgaaaaaga gtatagtttg aggtggacgg ctgctgctcc 1080 ggtcgctgct gctggtggaa caccaccagg tggaggtcgt ggacctggaa cctagtttga 1140 atactagatt tcgataatga cagcaattgt cattttagaa acggttttgc tacttgattt 1200 ggtttaatcc tttgacatgg gtcgcaggtg gcatagtaat tgtaaaattt cttctttatg 1260 ggcaacggag attggtcttc aaagtggcct aacgatcact tgttcataga tgatttcgga 1320 aagttggttt ggttcgatgt actgactgac atagttaaga tctctcattt cgtttcacag 1380 gtaccaaccg atttgtctcc aattccgagc tcctatatta gcttcatcga tggtcgaatt 1440 cccatgtgta tcaatcacct aggttgggtg tatatacgtg ttaaatttga gtctgaggaa 1500 gtattttatc agaagttcgg tgaggtagat gttagtaggt tcggcgagtc ggaacttcct 1560 ccggatttcg aagtcacttt cagtaaggtg actacgctgg tggataagtc cttggtgcga 1620 aaaagcgagc ttctcgaaaa gatgaacaat gaactcaaac aggaattaac taacaagctt 1680 gattcgctgg aaaaggtaaa tgttcagtta aagaaggaac ttagtcaagc gcaacaaagt 1740 aatttcactg aattgcgcga cgggttgatc ttaaactttt caaaagttgg cgggagaatc 1800 catcgtatgg ttgtcagatc catccaaaat cagcttaagc ttgtttcgga gatcaataat 1860 gatggtgaca ggtgggctac aatgggagct acggtaattc taaaggaagg agctcagtat 1920 ttagggtttg ttgttgtaaa gaatgatggg aaaatcggtg tcaaattcga tttaaccagg 1980 ttaaattctt tggataacca aactttgctg gcgtctgtgg tttaatatgt tgtaggttta 2040 aactcttttt gagcggggcg tgaaagtcgt ccggtggatc gtaccttatc gatttctgtt 2100 gtaggaagca gataaaataa ttcctgtagc tacgtctcac gtagggtggt tgttaccata 2160 aacaataatg tcgttggttg catttaaaat aattccattg accgatattc tatcatggga 2220 aacgtctgca gggcgttctt gataagctta actccgcagg ttacattttc aattgagttc 2280 gacggaaaga atttcttgtc taacgctggt agctcaatcg gatatgacga caacgtgccg 2340 aagataggca attggctagt tgtatattgt cactggtggc ccgatggttc aataactctg 2400 aggctcagtg cacggtctca tggcgtcgac gtcggaaagt cttgtacgtt tggtgcttat 2460 ggtcgtgggc gtcatcgttt tcaactgaat agaggagaaa ctctcgttaa ttcggtggct 2520 tacaagactg ttaactttga aggagatttc agagtaagag ttttggatag ctcacctttt 2580 gttattgatt ttcagtcgat cttttcaccg aagctggtaa aattcgctaa tgctagcggc 2640 tcgatagtag ttatcggacc tgcttttgat acagaggtta cactcgaaaa gtatcttcaa 2700 ttgctaaaag tcaagcctcg gatgatacga gctgtaccga tcccgatcgt tgctttagtg 2760 atttcgatca tttcgatgct agtggctgtg gtgaacacta ttctgggtgc tttgtcacga 2820 tttgtgccgg tggaggcagt gactttggta tgggtcgaat ctattagtag gttcgttgtg 2880 tacaaagata atgggagctt ctggaaacag aagttgataa gaaccgtatc agtggaccag 2940 gcttttctac tgttgcgagg accagagtca ttatctcagt ttgttaagga gtatggggta 3000 catgtctact ccccctttta tacttctgat ctgtgggaag atatggctaa ggacagtgtc 3060 tttggttcga cgtactctac ctcatcttct ttctgattta tgagacggga gtctttttaa 3120 caactttaaa cctattactg gttaaaattt gttttgtatt ttgtgttatt tgtttaacat 3180 ttgtgttatg ctatttgttt gtgtatgagc taggtattgg ttaattccat gcttaagtgg 3240 ttctaccgta gggacgatag tttgttatta ttattatttt aagtttgatt tgtgaaaatc 3300 ttctactttc tgaaaaggtc gttgaccaag agaaagtggg agggtgagta agtactcttg 3360 aagtggtgat ggttacaagg catagaaggg ttaaaccctt ccgccta 3407 //