ID   HM195284; SV 1; linear; genomic RNA; STD; VRL; 1824 BP.
XX
AC   HM195284;
XX
DT   29-DEC-2010 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Tobacco rattle virus RNA 2 variant AL3`AL-d coat protein and 16K-like
DE   protein genes, complete cds.
XX
KW   .
XX
OS   Tobacco rattle virus
OC   Viruses; Riboviria; Virgaviridae; Tobravirus.
XX
RN   [1]
RP   1-1824
RX   DOI; 10.1099/vir.0.028803-0.
RX   PUBMED; 21169212.
RA   Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.;
RT   "Deletions and recombinations with the RNA1 3' ends of different
RT   tobraviruses have created a multitude of tobacco rattle virus TCM-related
RT   RNA2 species in Alstroemeria and tulip";
RL   J. Gen. Virol. 92(Pt 4):988-996(2011).
XX
RN   [2]
RP   1-1824
RA   Koenig R.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut,
RL   Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig
RL   D38104, Germany
XX
DR   MD5; 2d159ea71246f3629456881ef12a9c87.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1824
FT                   /organism="Tobacco rattle virus"
FT                   /segment="2"
FT                   /host="Alstroemeria"
FT                   /strain="AL"
FT                   /mol_type="genomic RNA"
FT                   /note="RNA 2 variant AL3`AL-d"
FT                   /db_xref="taxon:12295"
FT   CDS             524..1135
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CKZ0"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="UniProtKB/TrEMBL:E7CKZ0"
FT                   /protein_id="ADU05342.1"
FT                   /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR
FT                   DMIPGIVEDLSTEIPVDENTRVPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN
FT                   PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS
FT                   RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT"
FT   CDS             1178..1588
FT                   /codon_start=1
FT                   /product="16K-like protein"
FT                   /db_xref="InterPro:IPR007968"
FT                   /db_xref="UniProtKB/TrEMBL:E7CKY7"
FT                   /protein_id="ADU05343.1"
FT                   /translation="MTCVLKGCVNEVTVLGHETCCIGHANKLRKQVADMVGVTRRCAEN
FT                   NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVEARNREVWKQIQRARKDTFATAKKSH
FT                   NSKSQKREREFGTPKRFLRDDIPFGIDQLFAF"
XX
SQ   Sequence 1824 BP; 515 A; 301 C; 455 G; 553 T; 0 other;
     tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca agttggagaa        60
     cgcggtagaa cgtacttatc cgatacagcc tttatccctt tgttgagagg tttttctcaa       120
     ctgcaccgaa attctggatt tagttggtcg ctagaagact gaaggaatgt aggtgtattt       180
     ttagatagtt aataagtatc ttctcaaata ccataaacct gagacgcatc gcttgcgaaa       240
     gtagcattaa aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt       300
     cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct gttcggggtt       360
     tcacactatc ttaagagaaa gtgttaaaat agtgagaata ttctcactat gagcataatt       420
     atactggtta tcctctcgct gatagagact atcattctta aaatcacttt gaaaggtagt       480
     cttgttgata cacaggttgc tttatcactt gcactactta cttatggcag gtagttatgg       540
     ggaaacgttc gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa       600
     ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg cagacagaga       660
     tatgatccct ggaattgttg aggatctgag tacggaaata ccagttgatg aaaacacgag       720
     ggttcctagt gggaaagtgt atcaccttct gaccaaggaa atgttgatgg cgatcgaagc       780
     tatccatgcg gcttcgtcgt tcaaaagaag agccgaggag aaaaataatg tcaatccgag       840
     acagagattt gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag       900
     acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga atagtaaatt       960
     agatgacgcc agtacggcct ttcataagag tttagctact cttaagggaa gtcgtccaaa      1020
     ggcggttgtc cagcgcactt tcgaaaaaga gtatagtttg aggtggacgg ctgctgctcc      1080
     ggtcgctgct gctggtggaa caccaccagg tggaggtcgt ggacctggaa cctagtttga      1140
     atactcgtct taatgcataa agaaatttat tgtcactatg acgtgtgtac tcaagggttg      1200
     tgtgaatgaa gtcactgttc ttggtcacga gacgtgttgt attggtcatg ctaacaagtt      1260
     gcgaaagcaa gttgctgaca tggttggtgt cacgcgtagg tgtgcggaaa ataattgtgg      1320
     atggtttgtc tgtgttgtta tcaatgattt tacttttgat gtgtataatt gttgtggccg      1380
     tagtcacctt gaaaagtgtc gtaagcgtgt cgaagcgaga aatcgagaag tctggaaaca      1440
     gattcaacga gctcggaaag atacgtttgc tacagctaaa aagtctcata attcgaaatc      1500
     ccaaaaaagg gagagagaat ttgggacacc aaaaagattt ttaagagatg atattccgtt      1560
     tggaattgat caattgtttg ctttttgatt ttgtattaaa ttgttatctg tttctgtgta      1620
     tagactgttt gagattggcg cttgaccgac tcattgtctt accatagggg aacggacttt      1680
     gtttgtgttg ttattttatt tgtattttat aaaaattctc agtgatctga aaaggcttta      1740
     ttgccaagag attgctgggg ggtgagtaag tacttttaaa gtgatgatgg ttacaaaggc      1800
     aaaaggggta aaacccctcg ccta                                             1824
//