ID   HM195283; SV 1; linear; genomic RNA; STD; VRL; 2309 BP.
XX
AC   HM195283;
XX
DT   29-DEC-2010 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Tobacco rattle virus RNA 2 variant AL3`AL-c coat protein and 16K-like
DE   protein genes, complete cds.
XX
KW   .
XX
OS   Tobacco rattle virus
OC   Viruses; Riboviria; Virgaviridae; Tobravirus.
XX
RN   [1]
RP   1-2309
RX   DOI; 10.1099/vir.0.028803-0.
RX   PUBMED; 21169212.
RA   Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.;
RT   "Deletions and recombinations with the RNA1 3' ends of different
RT   tobraviruses have created a multitude of tobacco rattle virus TCM-related
RT   RNA2 species in Alstroemeria and tulip";
RL   J. Gen. Virol. 92(Pt 4):988-996(2011).
XX
RN   [2]
RP   1-2309
RA   Koenig R.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut,
RL   Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig
RL   D38104, Germany
XX
DR   MD5; e39344b9442c4ba5a7ec7a022b8ef920.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2309
FT                   /organism="Tobacco rattle virus"
FT                   /segment="2"
FT                   /host="Alstroemeria"
FT                   /strain="AL"
FT                   /mol_type="genomic RNA"
FT                   /note="RNA 2 variant AL3`AL-c"
FT                   /db_xref="taxon:12295"
FT   CDS             524..1135
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q6EHZ8"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="UniProtKB/TrEMBL:Q6EHZ8"
FT                   /protein_id="ADU05340.1"
FT                   /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR
FT                   DMIPGIVEDLSTEIPVDENTRFPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN
FT                   PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS
FT                   RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT"
FT   CDS             1663..2073
FT                   /codon_start=1
FT                   /product="16K-like protein"
FT                   /db_xref="InterPro:IPR007968"
FT                   /db_xref="UniProtKB/TrEMBL:E7CKY7"
FT                   /protein_id="ADU05341.1"
FT                   /translation="MTCVLKGCVNEVTVLGHETCCIGHANKLRKQVADMVGVTRRCAEN
FT                   NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVEARNREVWKQIQRARKDTFATAKKSH
FT                   NSKSQKREREFGTPKRFLRDDIPFGIDQLFAF"
XX
SQ   Sequence 2309 BP; 661 A; 377 C; 577 G; 694 T; 0 other;
     tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca agttggagaa        60
     cgcggtagaa cgtacttatc cgatacagcc tttatccctt tgttgagagg tttttctcaa       120
     ctgcaccgaa attctggatt tagttggtcg ctagaagact gaaggaatgt aggtgtattt       180
     ttagatagtt aataagtatc ttctcaaata ccataaacct gagacgcatc gcttgcgaaa       240
     gtagcattaa aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt       300
     cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct gttcggggtt       360
     tcacactatc ttaagagaaa gtgttaaaat agtgagaata ttctcactat gagcataatt       420
     atactggtta tcctctcgct gatagagact atcattctta aaatcacttt gaaaggtagt       480
     cttgttgata cacaggttgc tttatcactt gcactactta cttatggcag gtagttatgg       540
     ggaaacgttc gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa       600
     ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg cagacagaga       660
     tatgatccct ggaattgttg aggatctgag tacggaaata ccagttgatg aaaacacgag       720
     gtttcctagt gggaaagtgt atcaccttct gaccaaggaa atgttgatgg cgatcgaagc       780
     tatccatgcg gcttcgtcgt tcaaaagaag agccgaggag aaaaataatg tcaatccgag       840
     acagagattt gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag       900
     acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga atagtaaatt       960
     agatgacgcc agtacggcct ttcataagag tttagctact cttaagggaa gtcgtccaaa      1020
     ggcggttgtc cagcgcactt tcgaaaaaga gtatagtttg aggtggacgg ctgctgctcc      1080
     ggtcgctgct gctggtggaa caccaccagg tggaggtcgt ggacctggaa cctagtttga      1140
     atactagatt tcgataatga cagcaattgt cattttaatc tgttggattc gagacttact      1200
     gagaaaagaa agaaaggaaa gactattcag agattcaaag ctcgagcttg cgataattgt      1260
     tcagttgcgc agtacaaggt tgaatacagt atttctacac aagagaatgt actcgatgtc      1320
     tggaaggtgg gttgtatttc tgaaggcgtt ccggtctgtg acggtacata ccctttcagt      1380
     attgaagtgt cgctcatttg ggttgctact gattcgacta ggcgtcttaa tgtggaagaa      1440
     ctgaacagtt cagattacat tgaaggcgat tttaccgatc aggaggtttt cggtgagttc      1500
     atgtctttga aacaagttga gatgaagacg attgaggcga agtatgacgg tccttacaga      1560
     ccagctacta ctagaccaaa atcattgttg tcgagtgaag atgttaaggg agcgtctaaa      1620
     aagaaaaact cgtcttaatg cataaagaaa tttattgtca ctatgacgtg tgtactcaag      1680
     ggttgtgtga atgaagtcac tgttcttggt cacgagacgt gttgtattgg tcatgctaac      1740
     aagttgcgaa agcaagttgc tgacatggtt ggtgtcacgc gtaggtgtgc ggaaaataat      1800
     tgtggatggt ttgtctgtgt tgttatcaat gattttactt ttgatgtgta taattgttgt      1860
     ggccgtagtc accttgaaaa gtgtcgtaag cgtgtcgaag cgagaaatcg agaagtctgg      1920
     aaacagattc aacgagctcg gaaagatacg tttgctacgg ctaaaaagtc tcataattcg      1980
     aaatcccaaa aaagggagag agaatttggg acaccaaaaa gatttttaag agatgatatt      2040
     ccgtttggaa ttgatcaatt gtttgctttt tgattttgta ttaaattgtt atctgtttct      2100
     gtgtatagac tgtttgagat tggcgcttga ccgactcatt gtcttaccat aggggaacgg      2160
     actttgtttg tgttgttatt ttatttgtat tttataaaaa ttctcagtga tctgaaaagg      2220
     ctttattgcc aagagattgc tggggggtga gtaagtactt ttaaagtgat gatggttaca      2280
     aaggcaaaag gggtaaaacc cctcgccta                                        2309
//