ID   HM195282; SV 1; linear; genomic RNA; STD; VRL; 2382 BP.
XX
AC   HM195282;
XX
DT   29-DEC-2010 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Tobacco rattle virus RNA 2 variant AL3`AL-b coat protein and 16K-like
DE   protein genes, complete cds.
XX
KW   .
XX
OS   Tobacco rattle virus
OC   Viruses; Riboviria; Virgaviridae; Tobravirus.
XX
RN   [1]
RP   1-2382
RX   DOI; 10.1099/vir.0.028803-0.
RX   PUBMED; 21169212.
RA   Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.;
RT   "Deletions and recombinations with the RNA1 3' ends of different
RT   tobraviruses have created a multitude of tobacco rattle virus TCM-related
RT   RNA2 species in Alstroemeria and tulip";
RL   J. Gen. Virol. 92(Pt 4):988-996(2011).
XX
RN   [2]
RP   1-2382
RA   Koenig R.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut,
RL   Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig
RL   D38104, Germany
XX
DR   MD5; 99e32b82513a2933eda14c48a6c0dc5d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2382
FT                   /organism="Tobacco rattle virus"
FT                   /segment="2"
FT                   /host="Alstroemeria"
FT                   /strain="AL"
FT                   /mol_type="genomic RNA"
FT                   /note="RNA 2 variant AL3`AL-b"
FT                   /db_xref="taxon:12295"
FT   CDS             524..1135
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q6EHZ8"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="InterPro:IPR036417"
FT                   /db_xref="UniProtKB/TrEMBL:Q6EHZ8"
FT                   /protein_id="ADU05338.1"
FT                   /translation="MAGSYGETFDGKILDDLSGAWVEKHNWSDILRRLTKIKFALQADR
FT                   DMIPGIVEDLSTEIPVDENTRFPSGKVYHLLTKEMLMAIEAIHAASSFKRRAEEKNNVN
FT                   PRQRFEAESSSSQLPSGGLVVRPAAGSGDSSLGEDLFSNSKLDDASTAFHKSLATLKGS
FT                   RPKAVVQRTFEKEYSLRWTAAAPVAAAGGTPPGGGRGPGT"
FT   CDS             1736..2146
FT                   /codon_start=1
FT                   /product="16K-like protein"
FT                   /db_xref="InterPro:IPR007968"
FT                   /db_xref="UniProtKB/TrEMBL:E7CKY7"
FT                   /protein_id="ADU05339.1"
FT                   /translation="MTCVLKGCVNEVTVLGHETCCIGHANKLRKQVADMVGVTRRCAEN
FT                   NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVEARNREVWKQIQRARKDTFATAKKSH
FT                   NSKSQKREREFGTPKRFLRDDIPFGIDQLFAF"
XX
SQ   Sequence 2382 BP; 680 A; 391 C; 592 G; 719 T; 0 other;
     tgccctggct ggggtatgtc tttgaacgca gtagaatgtg ctaattgaca agttggagaa        60
     cgcggtagaa cgtacttatc cgatacagcc tttatccctt tgttgagagg tttttctcaa       120
     ctgcaccgaa attctggatt tagttggtcg ctagaagact gaaggaatgt aggtgtattt       180
     ttagatagtt aataagtatc ttctcaaata ccataaacct gagacgcatc gcttgcgaaa       240
     gtagcattaa aagctaaacc ttactaaatg acaaatttta gtttggtggt tcaaaaacgt       300
     cactcaaagt caatttgagt gtgcgcagaa cagaacgatg tcacgttcct gttcggggtt       360
     tcacactatc ttaagagaaa gtgttaaaat agtgagaata ttctcactat gagcataatt       420
     atactggtta tcctctcgct gatagagact atcattctta aaatcacttt gaaaggtagt       480
     cttgttgata cacaggttgc tttatcactt gcactactta cttatggcag gtagttatgg       540
     ggaaacgttc gatggaaaaa ttctcgacga tctctctggg gcttgggttg agaaacataa       600
     ctggagcgac atcctccgaa ggttgacgaa gatcaaattt gctctccagg cagacagaga       660
     tatgatccct ggaattgttg aggatctgag tacggaaata ccagttgatg aaaacacgag       720
     gtttcctagt gggaaagtgt atcaccttct gaccaaggaa atgttgatgg cgatcgaagc       780
     tatccatgcg gcttcgtcgt tcaaaagaag agccgaggag aaaaataatg tcaatccgag       840
     acagagattt gaagccgaaa gttcgtcttc acagttacca tctggtggtt tagtagttag       900
     acctgctgct gggagtgggg attcatcgtt aggtgaagat ttgttttcga atagtaaatt       960
     agatgacgcc agtacggcct ttcataagag tttagctact cttaagggaa gtcgtccaaa      1020
     ggcggttgtc cagcgcactt tcgaaaaaga gtatagtttg aggtggacgg ctgctgctcc      1080
     ggtcgctgct gctggtggaa caccaccagg tggaggtcgt ggacctggaa cctagtttga      1140
     atactagatt tcgataatga ttaaatctta cgcgtttttg aagatagtag gtgtgcaact      1200
     tgttgttaca tcacatctac ctgcagatac gcctgggttt attcaaatcg atctgttgga      1260
     ttcgagactt actgagaaaa gaaagaaagg aaagactatt cagagattca aagctcgagc      1320
     ttgcgataat tgttcagttg cgcagtacaa ggttgaatac agtatttcta cacaagagaa      1380
     tgtactcgat gtctggaagg tgggttgtat ttctgaaggc gttccggtct gtgacggtac      1440
     ataccctttc agtattgaag tgtcgctcat ttgggttgct actgattcga ctaggcgtct      1500
     taatgtggaa gaactgaaca gttcagatta cattgaaggc gattttaccg atcaggaggt      1560
     tttcggtgag ttcatgtctt tgaaacaagt tgagatgaag acgattgagg cgaagtatga      1620
     cggtccttac agaccagcta ctactagacc aaaatcattg ttgtcgagtg aagatgttaa      1680
     gggagcgtct aaaaagaaaa actcgtctta atgcataaag aaatttattg tcactatgac      1740
     gtgtgtactc aagggttgtg tgaatgaagt cactgttctt ggtcacgaga cgtgttgtat      1800
     tggtcatgct aacaagttgc gaaagcaagt tgctgacatg gttggtgtca cgcgtaggtg      1860
     tgcggaaaat aattgtggat ggtttgtctg tgttgttatc aatgatttta cttttgatgt      1920
     gtataattgt tgtggccgta gtcaccttga aaagtgtcgt aagcgtgtcg aagcgagaaa      1980
     tcgagaagtc tggaaacaga ttcaacgagc tcggaaagat acgtttgcta cagctaaaaa      2040
     gtctcataat tcgaaatccc aaaaaaggga gagagaattt gggacaccaa aaagattttt      2100
     aagagatgat attccgtttg gaattgatca attgtttgct ttttgatttt gtattaaatt      2160
     gttatctgtt tctgtgtata gactgtttga gattggcgct tgaccgactc attgtcttac      2220
     cataggggaa cggactttgt ttgtgttgtt attttatttg tattttataa aaattctcag      2280
     tgatctgaaa aggctttatt gccaagagat tgctgggggg tgagtaagta cttttaaagt      2340
     gatgatggtt acaaaggcaa aaggggtaaa acccctcgcc ta                         2382
//