ID   HM188514; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188514;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate SDZZ26 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 2a64f91a4cbea7645dfc3b79042d57f3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="SDZZ26"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N7S2"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N7S2"
FT                   /protein_id="ADI33229.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDLDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDDFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 573 A; 331 C; 325 G; 572 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt tgaacaaccg accaacaatc       120
     actctgttat ctcatttcaa caatctattt catgaattaa acattgtcaa atcgccccac       180
     gttgcttctt cccaaactac cgttaatttg tacattcgta agcatttgtt gacccgactt       240
     catgatagac tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagac       300
     catattcgta gcttctttca aaatgaacac caacctattt tccagaccct aacgaacaac       360
     gacctaagtg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgta caaattgaga ccctaactga aggaaacatt       480
     actttgaagc ctttttccgc tgatggttta gaagtcattc tcgatgatag ttatattggt       540
     atagttggta aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa       600
     gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg tactggtaaa       660
     ttaagaattg atggtggtta cgattttaat tgtcctgcaa gcactacgga tgttacacat       720
     tacggtggtt atgaccaatt ttcacgtcaa atgttcgaac gtttgaatct attttataat       780
     attagcctta gcataatccc cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa       840
     ctaagtgttt tggatgcaga taaatcttta ctcgaacaaa cttggagcgc agtagcgtca       900
     tttgttgaaa cttggcaagt taaatctaaa gttaaagccg atgatctaga tgaatatgaa       960
     ttgaccagtt tgtccacttt gcgcactaat tacgatggca cctctgcttc tagtcctttc      1020
     acagataaga aattcattga ttggtacatt aagacttttt ctaaaactga gaaaggatcg      1080
     tcgttgcgtc gaaacgaatt agaagagaag agtgccacta gtacttcaac tacagtaaag      1140
     aaagttaaaa ttcatttctc cgttcaatat tttgatgact ttaaagttaa cggacatgaa      1200
     aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta tcgtaaaatt      1260
     ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt tggctgtacc ttgttttgat      1320
     tacattaagc ttggcgttga gaaagcattt catttagcac ccgtaattct gaagaagtat      1380
     aacttgacta ttgatgatat tatcaacttc attgataaag gaccttctta tttagctaaa      1440
     ttagacaaga ttgatgattg gtctttaatt tcaaagctta tcattactag cgttttacct      1500
     aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa ctcagtaatt      1560
     atcagtagag cgaacaattt gttgaaatct gatagggata ggctattaaa gaaggcactt      1620
     tccgccaacg tttcttcttc taacacatct agtcatgaac atgtacagaa gatagtatta      1680
     aacaaagtga caagatgacc actgggagta catccttagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//