ID   HM188483; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188483;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate JSSQ8 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; abab3f12f34a557eb6d8dc5aaabad425.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="JSSQ8"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N722"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N722"
FT                   /protein_id="ADI33198.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELASLSTLRTNYDGTSTSSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATNTSTTVKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 586 A; 335 C; 316 G; 564 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt taaacaaccg accaacaatc       120
     actctgctat ctcatttcaa caatctattt catgaactaa acattgtcaa atcgccccac       180
     gttgcatctt cccaaactac tgttaatttg tacattcgta agcatttgtt gacccgactt       240
     catgatagac tacaaaccgt agaaactagc actttgccca acattacaca acttaaagac       300
     catattcgta gcttttttca aaatgaacac caacctattt ttcagaccct aacgaacaac       360
     gacctaagtg aagaatttgt aggtgtgact acttttggac taagcttatt tgcaacctcc       420
     aaacttgatg ctgaacaaat agaacgtgta caaattgaga ccctaactga aggaaacatt       480
     actttgaaac ccttttctgc tgatggttta gaagtcattc tcgatgatag ttatattggt       540
     atagttggta aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa       600
     gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg tactggtaaa       660
     ttaagaattg atggtggtta cgatttcaat tgtcctgcaa gcactacaga tgttacacac       720
     tatggtggtt atgaccaatt ttcgcgtcaa atgttcgaac gtttgaatct cttttataat       780
     attagtctta gcataattcc cgtttcagct ttaaaaacag ttcatttatt cgaaaaagaa       840
     ttaagtgttt tggatgcaga taaatcttta ctcgaacaga cttggagcgc agtagcgtca       900
     tttgttgaaa cttggcaagt taaatctaaa gttaaagctg atgatcctga tgaatacgaa       960
     ctggccagtt tgtccacttt gcgtactaat tacgatggta cttccacttc tagtcctttt      1020
     acagataaga aattcattga ctggtatatt aagacttttt ctaagactga aaaaggatcg      1080
     tctttacgtc gaaatgaatt agaagagaaa agtgccacta atacttcaac cacagtaaag      1140
     aaggttaaaa ttcatttctc tgttcaatat tttgacgaat ttaaagttaa tggacacgaa      1200
     aaaagcattg tagttcaaac tcataaaggt gaaatgacac tagattatta ccgtaaaatt      1260
     ggcgaagtat taagtgcgat ttggaaacgc ggtaaatctt tggctgtacc ttgttttgat      1320
     tacattaaac ttggcgttga aaaagcattt catttggcac ccgtaattat gaagaagtat      1380
     aacttgacga tcgacgacat tatcaacttc attgataaag gaccttccta tttggctaag      1440
     ttagacaaaa ttgatgattg gtctctaatt tcaaagctta ttattaccag tgttttacct      1500
     aacattattc aagctgttta taaaaccgat ccaagtaata atgttatgaa ctcagtaatt      1560
     atcagtagag cgaacaactt gttgaaatct gatagggaca gactattaaa gaaggcactt      1620
     tccgccaacg tttcttcctc caatacatct agtcatgagc atacacagaa gatagtacta      1680
     aacaaagtga caagatgacc actggaagta catcattagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//