ID   HM188469; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188469;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate SDTA1 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; bde216e058a978d568dab919ea7e8114.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="SDTA1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N7P1"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N7P1"
FT                   /protein_id="ADI33184.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQIKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 582 A; 335 C; 321 G; 563 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt taaacaaccg accaacaatc       120
     actctgctat ctcatttcaa caatctattt catgaattaa acattgtcaa atcaccccac       180
     gttgcatctt cccaaactac cgttaatttg tatattcgta agcatttgct gacccgactt       240
     catgatagac tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagat       300
     catattcgta gcttctttca aaatgaacac caacctattt ttcagactct aacgaacaac       360
     gacctaagtg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgta caaattgaga ccctaactga aggaaacatt       480
     actttgaagc ccttttccgc tgatggttta gaagtcattc tcgatgatag ttatattggt       540
     atagttggta aaattccagg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa       600
     gttcctgctc aaatgggaat acttactgac gaagttaaac ttttgatgcg tactggtaaa       660
     ttaagaattg atggtggtta cgattttaat tgtcctgcaa gcactacgga cgttacacat       720
     tacggtggtt atgaccaatt ttcacgtcaa atgttcgaac gtttgaatct attttataat       780
     attagcctta gcataatccc agtttcagct ttaaaaacag ttcatttatt tgaaaaagaa       840
     ctaagtgttt tggatgcaga taaatcttta ctcgaacaaa cttggagcgc agtagcgtca       900
     tttgttgaaa cttggcagat taaatctaaa gttaaagccg atgatccaga tgaatatgaa       960
     ttgaccagtt tgtccacgtt gcgcactaat tacgatggca cctctgcttc tagtcctttt      1020
     acagataaga aattcattga ttggtacatt aagacttttt ctaaaactga gaaaggatcg      1080
     tcgttgcgtc gaaacgaatt agaagagaaa agtgccacta gtacttcaac tacagtaaaa      1140
     aaggttaaaa ttcatttctc cgttcaatat tttgatgaat ttaaagttaa tggacatgaa      1200
     aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta tcgtaaaatt      1260
     ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt tggctgtacc ttgttttgat      1320
     tacattaagc ttggcgttga gaaagcattt catttagcac ctgtaattct gaagaagtat      1380
     aacttgacta ttgatgatat tatcaacttc attgataaag gaccttctta tttagctaaa      1440
     ttagacaaga ttgatgattg gtctctaatt tcaaagctta tcattaccag cgttttacct      1500
     aacatcattc aagctgttta caaaaccgat ccaagtaaca atgttatgaa ctcagtaatt      1560
     atcagtagag cgaacaattt gttgaaatct gatagggaca ggctattaaa gaaggcactt      1620
     tccgccaacg tttcttcctc caatacatct agtcatgagc atacacagaa gatagtacta      1680
     aacaaagtga caagatgacc actggaagta catcattagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//