ID   HM188464; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188464;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate SDWF5 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 46604b35999229e60ae137e381d281a9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="SDWF5"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N7N7"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N7N7"
FT                   /protein_id="ADI33179.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITRLRDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYILTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 570 A; 331 C; 327 G; 573 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt taaacaaccg accaacaatc       120
     actctgctat ctcatttcaa caatctattt catgaactaa acattgtcaa atcgccccac       180
     gttgcatctt cccaaactac tgttaatttg tacattcgta agcatttgtt gacccgactt       240
     catgatagac tacaaaccgt agaaactagc actttgccca acattacacg acttagagac       300
     catattcgta gcttttttca aaatgaacac caacctattt ttcagaccct aacgaacaac       360
     gacctaagtg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgta caaattgaga ccctaactga aggaaacatt       480
     actttgaaac ccttttctgc tgatggttta gaagtcattc tcgatgatag ttatattggt       540
     atagtcggta agattcctgg tttagaagtt cataaattgc tagataaatg ttgtcgtgaa       600
     gttcctgctc agatgggaat acttactgat gaagttaaac ttttgatgcg tactggtaaa       660
     ttaagaattg atggtggtta cgattttaat tgtcctgcaa gcactactga tgttacacat       720
     tatggtggtt atgaccaatt ttcacgtcaa atgttcgaac gtttgaatct attttataac       780
     attagcctta gcataattcc cgtttcagct ttgaaaacag ttcatctatt tgaaaaagaa       840
     ctaagtgttt tagatgcaga taaatcttta ctcgaacaaa cttggagcgc ggtagcgtca       900
     tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga tgaatatgaa       960
     ctgaccagtt tgtccacttt gcgcactaat tacgatggca cctctgcttc tagtcctttt      1020
     acggataaga aatttattga ttggtacatt aagacttttt ctaagactga gaaaggatcg      1080
     tcgttgcgtc gaaacgaatt agaagagaaa agtgccacta gtacttcaac tacagtaaag      1140
     aaggttaaaa ttcatttctc cgttcaatat tttgatgaat ttaaagttaa tggacatgaa      1200
     aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta tcgtaaaatt      1260
     ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt tggctgtacc ttgttttgat      1320
     tacattaagc ttggcgttga gaaagcattt catttagcac ccgtaattct gaagaagtat      1380
     attttgacta ttgatgacat tatcaacttt attgataaag gaccttctta tttagctaaa      1440
     ttagacaaga ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttacct      1500
     aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa ctcagtaatc      1560
     atcagtagag cgaacaattt gttgaaatct gatagggaca ggctattaaa gaaggcactt      1620
     tccgccaacg tttcttcttc caacacatct agtcatgaac atgtacagaa gatagtatta      1680
     aacaaagtga caagatgacc actgggagta catccttagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacagcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//