ID   HM188454; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188454;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate SDJNi34 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 16872cc3ee918e5d3caa5a7ebc1c19ea.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="SDJNi34"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N7M9"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N7M9"
FT                   /protein_id="ADI33169.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSPSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 578 A; 334 C; 321 G; 568 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt tgaacaaccg accaacaatc       120
     actctgctat ctcatttcaa caatctattt catgaattaa acattgtcaa atcgccccac       180
     gttgcatctt cccaaactac cgttaatttg tacattcgta agcatttgtt gacccgactt       240
     catgatagac tgcaaactgt agaaactagc actttaccca acatcacgca acttaaagac       300
     cacattcgta gcttctttca aaatgaacac caacctattt ttcagaccct aactaacaat       360
     gacttaagtg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgta caaattgaga ccctaactga aggaaacatt       480
     actttgaaac ccttttccgc tgatggtcta gaagtcattc tcgatgatag ttacattggt       540
     atagttggta aaattccagg tttagaagtt cataaattac tagataaatg ttgtcgtgaa       600
     gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg tactggtaaa       660
     ttaagaattg atggtggtta cgattttaat tgtcctgcaa gcactacaga tgttacacat       720
     tacggtggtt atgaccaatt ttcacgtcaa atgttcgaac gtttaaatct attttacaat       780
     attagcctta gcataatccc cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa       840
     ctaagtgttt tggatgcaga taaatcttta ctcgaacaaa cttggagcgc agtagcgtca       900
     tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga tgaatatgaa       960
     ttgaccagtt tgtccacgtt gcgcactaat tacgatggca cctctgcttc tagtcctttc      1020
     acagataaga aattcattga ttggtacatt aagacctttt ctaaaactga gaaaggatct      1080
     tcgttgcgtc gaaacgaatt agaagagaaa agtgccacta gtacttcaac tacagtaaag      1140
     aaggttaaaa ttcatttctc cgttcaatat tttgatgaat ttaaagttaa tggacatgaa      1200
     aaaagcgttg tagttcaaac tcataaaggc gaaatgacat tagattatta tcgtaagatt      1260
     ggcgaagtgt taagtgctat ttggaaacgt ggtaaatcct tggctgtacc ttgttttgat      1320
     tacattaaac ttggcgttga gaaagcattt catttagcac ccgtaattct gaagaagtat      1380
     aacttgacta ttgatgatat tatcaacttt attgataaag gaccttctta tttagctaaa      1440
     ttagataaga ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttacct      1500
     aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa ctcagtaatt      1560
     atcagtagag cgaacaattt gttgaaatct gatagggata ggctattaaa gaaggcactt      1620
     tccgccaacg tttctccttc caacacatct agtcatgaac atgtgcagaa gatagtatta      1680
     aataaagtga caagatgacc actgggagta catccttagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//