ID   HM171315; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171315;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Uganda:Njule 16:2004] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Uganda:Njule 16:2004]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Yadav J.S., Bagewadi B., Patil B.L., Alicai T., Ogwok E., Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 70c2d230edb84df2b6e9f5d9fbbb9251.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak virus-[Uganda:Njule
FT                   16:2004]"
FT                   /host="Manihot esculenta cv. NJule"
FT                   /isolate="UG:Nju16:04"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda"
FT                   /collection_date="2004"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980537"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIM1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIM1"
FT                   /protein_id="ADV16263.1"
FT                   /translation="ALNQEEIEAEITALKKLWRDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVIDESQNNQQVDPRKPKF
FT                   KIRGDGSAVRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YVPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNGTSDERKN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT                   VIKAARNAGYTSIENKWLGIDFLAEVQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT                   DNNVDKERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 373 A; 173 C; 279 G; 276 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcactgctt taaagaagct gtggagagat        60
     aatgggccaa caaggacgcg tagtccattt gaggctagga ggttgagagc cccacaagtt       120
     gagcgtgtga atgagttact tcagaaactg aaagatgaag gattgcaaac aaagaagagg       180
     ccatgtggag aaccagatga tggggaagtg gtggatgatg atagtgatga tggtaataat       240
     cagagatctg gaaaggaagt tattgatgaa agccagaata atcagcaagt tgatccaaga       300
     aagccaaaat tcaaaattag aggagatgga agtgctgtta gacgggatga cattgataaa       360
     attccaacta atgctcttga gatcaagaag acatttaagc ctccaaaggt ttcacaatca       420
     gcttacattt ggattccacg ctcccagagg gataatctga ctcctgatgt aattcagaat       480
     ttcttggcat atgtacctcc atctcatgca atagataatc aacttgcttc aggaattgaa       540
     gttgagaact gggcaattga ggttgctaaa gcatatggag ttaatataca ggaattttat       600
     cgcacaattt tgccagcttg gattgtgaac tgtatagtga acggtactag cgatgaaagg       660
     aagaatgaga agtcatggcg agcagttgaa ttgaattctc agggggaaga tgttgatgat       720
     tttgagtatc caatggagcc aatgtacaaa tttgcattgc caactatgag gaaggttatg       780
     agaaacttct ctagccaagc tatcctcatg tatcagaata gtgttgctgc aggtaaggcg       840
     tttgtgataa aagctgctag aaatgctgga tacacaagca ttgaaaataa atggctaggt       900
     atagattttc ttgccgaggt tcaattgtct cagagtcaac ttgatatcaa gcatcagatt       960
     ctggcagcga atgttggtag aacaaagaca agactgtttg cactagcagc tcctggagat      1020
     gataataatg tagataaaga aaggcacacg acacacgatg tcagtgcaaa caggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//