ID   HM171313; SV 1; linear; genomic RNA; STD; VRL; 1134 BP.
XX
AC   HM171313;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak virus-[Uganda:Wakiso 39:2009] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Cassava brown streak virus-[Uganda:Wakiso 39:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1134
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1134
RA   Bagewadi B., Yadav J.S., Patil B.L., Alicai T., Ogwok E., Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 4800bdcc724a27fca780b471c26438ec.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1134
FT                   /organism="Cassava brown streak virus-[Uganda:Wakiso
FT                   39:2009]"
FT                   /host="Manihot esculenta"
FT                   /isolate="UG:Wak39:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Wakiso District"
FT                   /collection_date="Sep-2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980543"
FT   CDS             <1..>1134
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL9"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL9"
FT                   /protein_id="ADV16261.1"
FT                   /translation="AIDKDEIEAEITKLKEVWRNNKPTRTRSPFESKRLRAPQVARVNE
FT                   LLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQQINKEKAPMESPTERNQSEKPIG
FT                   EEEEKHKKTRFRIRAGGGSEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWIPRSQRDN
FT                   LTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTILPAWIVNC
FT                   IVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAILM
FT                   YQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRSK
FT                   TKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAIE"
XX
SQ   Sequence 1134 BP; 398 A; 192 C; 282 G; 262 T; 0 other;
     gcaattgaca aggatgagat tgaagctgag ataacgaaat taaaggaagt gtggaggaac        60
     aacaagccaa ctagaactcg aagtccgttt gaatcaaaga ggcttcgtgc tcctcaagtg       120
     gcccgtgtga atgaactgct taaacaactg aaagatgctg gaatacaaac aagtaagagg       180
     ccatgtggag aacctgatga aggagaagtt gctagcccag agtcaagtga agatgaggaa       240
     caacaaataa acaaagaaaa agcgcctatg gaatcaccta ctgaacggaa tcaatcagag       300
     aaacctatag gtgaggagga ggagaagcat aaaaagacaa ggttcagaat aagagctggt       360
     ggtggaagtg aaaagaggga tgatatagat aagattccaa ccaacgctct agaatttcgg       420
     aaaagcttca aaccaccaaa agtgtcacaa gcggcatatg tgtggatacc gcgttcgcaa       480
     agagataatt tgacacctga tgtcatacag aactttctag cgtacgtgcc gccatcacat       540
     gctatagaca atcaattggc ttccggagtt gaagttgaga attgggccat cgaagtttca       600
     aaagcttatg gagtcaccat tcaagagttt tatagaacga tcctacctgc ttggatcgtc       660
     aattgtattg tgaatgggac cagtgatgaa aggaagaatg agaaatcgtg gagagctgtt       720
     gagttaaatg cacagggtga ggatattgat gattcagaat accctatgga accaatgtac       780
     aaatttgctc tcccgacaat gaggaaaata atgagaaatt tttccagcca agcaattcta       840
     atgtatcaga atagcgtgac tgctggaaaa gcttttgtga taaaagcagc ccgaaatgct       900
     gggtatacaa gcattgaaaa caagtggttg ggtattgact tcctagccga agcacaattg       960
     tcacagagcc aacttgatat caaacatcaa atattggctg ctaatgttgg tagaagtaaa      1020
     actaagttgt ttgctttagc tgctcctggt gatgataata atgtggataa agaaaggcac      1080
     actacgcggg atgttagtgc aactaggcat agctatgcag gtgctgctat tgaa            1134
//