ID   HM171312; SV 1; linear; genomic RNA; STD; VRL; 1134 BP.
XX
AC   HM171312;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak virus-[Uganda:Wakiso 33:2009] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Cassava brown streak virus-[Uganda:Wakiso 33:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1134
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1134
RA   Bagewadi B., Yadav J.S., Patil B.L., Alicai T., Ogwok E., Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 6ed5a6bb7d63fdfda3bdddf65cd46938.
DR   EuropePMC; PMC6472602; 31007377.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1134
FT                   /organism="Cassava brown streak virus-[Uganda:Wakiso
FT                   33:2009]"
FT                   /host="Manihot esculenta"
FT                   /isolate="UG:Wak33:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Wakiso District"
FT                   /collection_date="Sep-2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980542"
FT   CDS             <1..>1134
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL8"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL8"
FT                   /protein_id="ADV16260.1"
FT                   /translation="AIDKDEIEAEITKLKEMWRNNKPTRTRSPFESKRLRAPQVARVNE
FT                   LLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQQTNKGKAPMESPTERNQSEKPIG
FT                   EEEEKHKKTRFRIRAGGGSEKRDDIDKIPTNALEFRKNFKPPKVSQAAYVWIPRSQRDN
FT                   LTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTILPAWIVNC
FT                   IVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAILM
FT                   YQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRSK
FT                   TKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAIE"
XX
SQ   Sequence 1134 BP; 402 A; 193 C; 278 G; 261 T; 0 other;
     gcaattgaca aggatgagat tgaagctgag ataacgaaat taaaggaaat gtggaggaac        60
     aacaagccaa ctagaactcg aagtccgttt gaatcaaaga ggcttcgtgc tcctcaagtg       120
     gcccgtgtga atgaactgct taaacaactg aaagatgctg gaatacaaac aagtaagagg       180
     ccatgtggag aacctgatga aggagaagtt gctagcccag agtcaagtga agatgaggaa       240
     caacaaacaa acaaaggaaa agcgcctatg gaatcaccta ctgaacggaa tcaatcagag       300
     aaacctatag gtgaggagga ggagaagcat aaaaagacaa ggttcagaat aagagctggt       360
     ggtggaagtg aaaagagaga tgatatagat aagattccaa ccaacgctct agaatttcgg       420
     aaaaacttca aaccaccaaa agtgtcacaa gcggcatatg tgtggatacc acgttcgcaa       480
     agagacaatt tgacacctga tgtcatacag aactttctag cgtacgtgcc gccatcacat       540
     gctatagaca atcaattggc ttccggagtt gaagttgaga attgggccat cgaagtttca       600
     aaagcttatg gagtcaccat tcaagagttt tatagaacga tcctacctgc ttggatcgtc       660
     aattgtattg tgaatgggac cagtgatgaa aggaagaatg agaaatcgtg gagagctgtt       720
     gagttaaatg cacagggcga ggatattgat gattcagaat accctatgga accaatgtac       780
     aaatttgctc tcccgacaat gaggaaaata atgagaaatt tttccagcca agcaattcta       840
     atgtatcaga atagtgtgac tgctggaaaa gcttttgtga taaaagcagc ccgaaatgct       900
     gggtatacaa gcattgaaaa caagtggttg ggtattgact tcctagctga agcacaattg       960
     tcacaaagcc aacttgatat caaacatcaa atattggctg ctaatgttgg tagaagtaaa      1020
     actaagttgt ttgctttagc tgctcctggt gatgataata atgtggataa agaaaggcac      1080
     actacgcggg atgttagtgc aactaggcat agctatgcag gtgctgctat tgaa            1134
//