ID   HM171309; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171309;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Uganda:Busia 6:2009] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Uganda:Busia 6:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Bagewadi B., Yadav J.S., Patil B.L., Alicai T., Ogwok E., Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; fcf7ceb8b4cd988bd4800748ff3886fa.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak virus-[Uganda:Busia
FT                   6:2009]"
FT                   /host="Manihot esculenta"
FT                   /isolate="UG:Bus6:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Busia District"
FT                   /collection_date="Sep-2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980533"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL5"
FT                   /protein_id="ADV16257.1"
FT                   /translation="ALNQEEIEAEITALKKIWKDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGKNQRSGKEVVDESQNDQQVDPRKSKF
FT                   KIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNGTSDERRN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT                   VIKAARNAGYTNIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT                   DNNVDRERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 380 A; 179 C; 274 G; 268 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcactgctc taaagaagat atggaaggat        60
     aatggaccaa caagaacacg tagtccattt gaggctagga gactgagagc cccacaagtt       120
     gagcgtgtaa atgagttact tcagaaacta aaggatgaag gattgcaaac aaagaagagg       180
     ccatgtggag aaccagatga cggagaagtg gtagatgatg atagtgatga tggtaaaaat       240
     cagagatctg ggaaggaagt tgttgatgaa agccagaatg atcagcaagt tgatccaaga       300
     aaatcgaaat tcaaaattag aggagatgga agtgccatta gacgggatga cattgataaa       360
     attccaacta atgctctcga gatcaaaaag acttttaagc ctccaaaggt gtcgcagtca       420
     gcttacattt ggattccgcg ctctcaaagg gataacctga ctcctgatgt aattcagaat       480
     ttcctggcat atatacctcc atctcatgct atagacaatc aacttgcttc aggaattgaa       540
     gttgagaatt gggcaattga agttgctaaa gcgtatggag ttaatataca ggaattttat       600
     cgcacaattt tgccagcttg gatagtgaac tgtatagtga atggtactag cgatgaaagg       660
     agaaatgaga agtcatggcg agcagttgag ttgaattctc agggggaaga tgttgatgat       720
     tttgagtatc caatggagcc aatgtacaaa ttcgcattgc caactatgag gaaggttatg       780
     agaaatttct ctagccaagc tatcctcatg tatcagaata gtgttgctgc aggtaaggca       840
     tttgtgataa aagctgctag aaatgctgga tacacaaata ttgaaaataa atggctaggt       900
     atagattttc ttgccgaagc ccaattgtcc cagagtcaac ttgatatcaa gcaccagatt       960
     ctggcagcaa atgttggtag aacaaagaca agactgtttg cattagcggc tcctggggac      1020
     gataacaatg tagatagaga aaggcacacg acacatgatg tcagtgcaaa caggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//