ID   HM171308; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171308;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Uganda:Busia 2:2009] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Uganda:Busia 2:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Bagewadi B., Yadav J.S., Patil B.L., Alicai T., Ogwok E., Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 932569df4ee2526da02f36b11732e4c3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak virus-[Uganda:Busia
FT                   2:2009]"
FT                   /host="Manihot esculenta"
FT                   /isolate="UG:Bus2:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Busia District"
FT                   /collection_date="Sep-2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980532"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL4"
FT                   /protein_id="ADV16256.1"
FT                   /translation="ALNQEEIEAEITALKKIWKDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQVDPRKPKF
FT                   KVRGDGNTIRWDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYHTILPAWIVNCIVNGTSDERKN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT                   VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT                   DNNVDRERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 384 A; 184 C; 269 G; 264 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcacagctc taaagaagat atggaaggat        60
     aatggaccaa caagaacgcg tagtccattt gaggctagga gattaagagc cccacaagtt       120
     gagcgtgtaa atgagttact tcagaaactg aaggatgaag gattgcaaac aaagaagagg       180
     ccatgtggag aaccagatga cggagaagtg gtcgatgatg atagcgatga tggtaataat       240
     cagagatctg gaaaagaagt tgttgatgaa agccagaata atcagcaagt tgatccaaga       300
     aagccgaaat tcaaagttag aggagatgga aacaccatta gatgggatga cattgataaa       360
     attccaacta atgctcttga gatcaagaag acttttaagc ctccaaaggt gtcacagtca       420
     gcctacattt ggattccacg ctctcaaagg gataatctaa cccctgatgt aattcagaat       480
     ttcctggcat atatacctcc atctcatgct atagataatc aacttgcttc aggaattgaa       540
     gttgagaatt gggcaattga ggttgctaaa gcatatggag ttaatataca ggaattttat       600
     cacacaattt tgccagcttg gatagtgaac tgtatagtga atggtactag cgatgaaagg       660
     aaaaatgaga agtcgtggcg agcagtcgag ttgaattctc agggggaaga tgttgatgat       720
     tttgagtatc caatggaacc aatgtacaaa tttgcattgc caactatgag gaaggttatg       780
     agaaacttct ctagccaagc tatcctcatg tatcagaata gtgttgctgc aggtaaggcg       840
     tttgtaataa aagctgctag aaatgctgga tacacaagta ttgaaaataa atggctaggt       900
     atagattttc ttgccgaagc ccaattgtcc cagagtcaac ttgacatcaa gcaccagatt       960
     ctggcagcga atgttggtag aacaaagaca agactgtttg cattagcagc tcctggggac      1020
     gataacaatg tagacagaga aaggcacacg acacacgatg tcagtgcaaa caggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//