ID   HM171306; SV 1; linear; genomic RNA; STD; VRL; 1098 BP.
XX
AC   HM171306;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Salima 60:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Salima 60:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1098
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1098
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 2fdce2543ea4e80a72c8a26432d6e5ed.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1098
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Salima 60:2009]"
FT                   /host="Manihot esculenta cv. Chowawa"
FT                   /isolate="MW:Sal60:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Salima Dist., Central Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980530"
FT   CDS             <1..>1098
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL2"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL2"
FT                   /protein_id="ADV16254.1"
FT                   /translation="ALNQEEIEAEIAALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGESVDDDSDDGDNQNSGKKVDDSQSNQQVDPRKPKFK
FT                   IRGDGSTIRRDDIDKIPTNALEIKKTFKPPRVSQSAYIWIPRSQRDNLTPDVIQNFLAY
FT                   IPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKNE
FT                   KSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAFV
FT                   IKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILTANVGRTKTRLFALAAPGDD
FT                   NNVDKERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1098 BP; 373 A; 179 C; 274 G; 272 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcgctgctt taaagaagct gtggaaagac        60
     aatggaccga caagaacgcg tagtccattt gaagctagga gattgagagc accgcaagtt       120
     gagcgcgtga atgagttact tcagaaatta aaagatgaag gattgcaaac aaagaagagg       180
     ccatgtggag aaccagatga cggggaatct gtagatgatg acagtgatga tggtgataat       240
     cagaattctg gaaagaaagt tgatgatagt cagagtaatc agcaagttga tccaagaaag       300
     ccaaaattta aaattagagg agatggaagt accattagac gggatgatat tgataaaatt       360
     ccaactaatg ctcttgagat caagaagaca tttaagcctc caagggtgtc acagtcagct       420
     tacatttgga ttccgcgctc tcaaagggat aacctaaccc ctgatgtcat tcagaatttt       480
     ctggcgtata tacctccgtc tcatgctata gacaaccaac ttgcctcagg aattgaagtt       540
     gagaattggg caattgaggt tgctaaagca tatggagtca atatacagga attttatcgc       600
     acagttttgc cagcttggat agtgaattgt atagttaatg gaactagcga tgaaaggaaa       660
     aatgagaagt catggcgagc agttgagctg aattctcagg gggaagatgt tgatgatttc       720
     gagtatccaa tggagccaat gtataaattt gcattgccaa ccatgaggaa ggttatgaga       780
     aacttctcta gccaagctat cctcatgtac cagaatagtg ttgctgcagg taaggcgttt       840
     gtaataaaag ctgctaggaa tgctgggtat acaagtattg agaataaatg gctaggtata       900
     gattttcttg ccgaagctca attatctcag agtcaacttg atatcaagca tcagattctg       960
     acagcgaatg ttggtagaac aaagacaagg ctgtttgcat tagcagctcc tggagatgat      1020
     aacaatgttg ataaagaaag gcacacgaca cacgatgtca gtgcaaacag gcacagttac      1080
     agtggtgccg caattgaa                                                    1098
//