ID   HM171305; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171305;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Nkhotakota 42:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Nkhotakota 42:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 29b6223fa610f912b8c3772dc91a1a7a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Nkhotakota 42:2009]"
FT                   /host="Manihot esculenta cv. Gomani"
FT                   /isolate="MW:Nkt42:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Nkhotakota Dist., Central Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980529"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL1"
FT                   /protein_id="ADV16253.1"
FT                   /translation="ALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQQLKDEGLQTKKRPCGEPDDGEVVDDESDDGNNQRSGKEVVDEDQNNQHMEPKKSKF
FT                   KTRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YIPPSHAIDNQLASGVEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT                   VIKAARNAGYTSVENKWLGIDFLAEVQLSQSQLDIKHQILAANVSRTKTRLFALAAPGD
FT                   DNNVDKERHTTHDVSATRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 380 A; 183 C; 273 G; 265 T; 0 other;
     gccttaaatc aggaggaaat agaagcagaa ataactgcct tgaagaagtt gtggaaagat        60
     aatggaccaa caagaacacg tagtccgttt gaagctagga ggctgagagc tccgcaagtt       120
     gagcgtgtca atgaattact ccaacaactg aaagatgaag gattgcaaac aaagaagagg       180
     ccatgtgggg aaccagatga tggggaagtg gtagatgatg aaagtgatga tggtaacaac       240
     caaagatctg gaaaggaagt tgttgacgaa gatcagaaca atcagcacat ggaaccgaag       300
     aaatcaaaat tcaagaccag aggagatgga agtgctatta gacgggacga cattgataaa       360
     atcccaacta atgctcttga gattaagaag acattcaagc ctccaaaagt gtcacagtcg       420
     gcttatattt ggattccgcg ctctcaaagg gataatctaa cccctgatgt tattcagaac       480
     ttcctggcgt atatacctcc atctcatgcc atagataacc aacttgcttc aggagttgaa       540
     gttgaaaatt gggcaatcga ggttgctaag gcatatggag ttaatataca agagttctat       600
     cgcacagtct tgccagcttg gatagtgaat tgtatagtga atgggactag cgatgaaagg       660
     aaaaatgaaa agtcatggcg agcagtcgaa ctgaattctc aaggggaaga tgttgatgat       720
     tttgagtatc caatggagcc aatgtacaaa tttgcattgc caactatgag gaaggttatg       780
     agaaacttct ctagccaggc tatcctcatg tatcagaata gtgttgctgc aggtaaggcg       840
     tttgtaataa aagctgctag gaatgctgga tatacaagtg ttgagaataa atggctaggt       900
     atagattttc ttgccgaagt tcaattatct caaagtcaac ttgatatcaa gcatcagatt       960
     ctggcagcaa atgttagtag aacaaagaca aggctgtttg cattagcagc tcctggagat      1020
     gataataatg tagataaaga aaggcacacg acacatgatg tcagtgcaac taggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//