ID   HM171304; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171304;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Nkhata 33:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Nkhata 33:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; b0fdb09437bb0374103a5f82fe0afe38.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Nkhata 33:2009]"
FT                   /host="Manihot esculenta cv. Chakuwawa"
FT                   /isolate="MW:Nkh33:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Nkhata bay Dist., Northern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980528"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL0"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL0"
FT                   /protein_id="ADV16252.1"
FT                   /translation="ALNQEEIEAEITALKKLWRDNGPTRTRSPFEARRLRASQVERVNE
FT                   LLQKLKDDGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQVDPRKPKF
FT                   KIRGDGSTIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT                   VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVSRTRTRLFALAAPGD
FT                   DNNVDKERHTTHDVSATRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 377 A; 175 C; 274 G; 275 T; 0 other;
     gccttaaatc aggaggaaat agaagcagaa attactgctt taaagaagct ttggagagat        60
     aatggaccaa caaggacgcg tagtccattt gaggctagga gattgagagc ctcacaggtt       120
     gagcgcgtca atgagttact ccagaaacta aaagatgatg gattgcaaac aaagaagagg       180
     ccatgtggag aaccagatga tggggaagtg gtagatgatg atagtgatga tggaaataat       240
     cagagatctg gaaaggaggt tgttgatgaa agccagaaca atcagcaagt tgatccaagg       300
     aagccgaagt tcaagattag aggagatgga agtactatta gacgggatga cattgataaa       360
     attccaacta atgctcttga gatcaagaag acattcaaac ctccaaaggt gtcacagtca       420
     gcctacattt ggattccacg ctctcaaagg gataatctaa cccctgatgt gattcagaat       480
     ttcttggcat atatacctcc atctcatgct atagataacc aacttgcttc aggaattgaa       540
     gttgagaatt gggcaattga ggttgctaaa gcatatggag ttaatataca ggaattttat       600
     cgcacagtct tgccagcttg gatagtgaat tgcatagtga atggaactag tgatgaaagg       660
     aagaatgaga agtcatggcg agcagttgag ttgaattctc aaggggaaga tgttgatgat       720
     tttgagtatc caatggagcc aatgtataaa tttgcattgc caactatgag gaaggttatg       780
     agaaacttct ctagtcaagc aatcctcatg tatcagaata gtgttgctgc aggtaaggcg       840
     tttgtaataa aagctgctag aaatgctgga tacacaagta ttgaaaacaa atggcttggc       900
     atagattttc ttgccgaagc tcaattgtcc caaagtcaac ttgatatcaa gcatcagatt       960
     ctggcagcaa atgttagtag aacaaggaca aggctgtttg cattagcagc tcctggagat      1020
     gataataatg tagataaaga aaggcacacg acacatgatg tcagtgcaac taggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//