ID   HM171303; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171303;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Nkhata 29:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Nkhata 29:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; e6fa39811b0c90379679bd4f5a3c8339.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Nkhata 29:2009]"
FT                   /host="Manihot esculenta cv. Mpuma"
FT                   /isolate="MW:Nkh29:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Nkhata bay Dist., Northern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980527"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIK9"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIK9"
FT                   /protein_id="ADV16251.1"
FT                   /translation="ALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGEVVDDESDDGNNQRPGKEVVDESQNNQQVDPRKPKF
FT                   KIRGDESSTRRDDIDKIPTNALEIKKTFKPPRVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YVPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAVLMYQNSVAAGKAF
FT                   VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT                   DNNVDRERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 377 A; 174 C; 277 G; 273 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcactgctt taaagaagct ttggaaagat        60
     aatggaccaa caaggacgcg tagtcctttt gaggctagga gattgagagc cccacaagtt       120
     gagcgcgtaa atgagttact tcagaaacta aaagatgaag ggttgcaaac aaagaagagg       180
     ccatgtggag aaccagatga tggagaagtg gtggatgatg aaagtgatga tggaaataat       240
     cagagacctg gaaaggaagt tgttgatgaa agccagaata atcagcaagt tgatccaaga       300
     aagccgaaat tcaagattag aggagatgaa agttctacta gacgggatga cattgataaa       360
     attccaacta atgctcttga aatcaagaag acattcaagc ctccaagggt gtcacagtca       420
     gcttacattt ggataccacg ctctcagagg gataatttaa ctcctgatgt aattcagaat       480
     ttcctggcat atgtacctcc atctcatgct atagataatc aacttgcttc aggaattgaa       540
     gttgagaatt gggcaattga ggttgctaaa gcatatggag ttaatataca ggagttttat       600
     cgtacagttt tgccagcttg gatagtgaac tgtatagtga atggaactag cgatgaaagg       660
     aagaatgaga agtcatggcg agcagttgag ttgaattctc agggggaaga tgttgatgat       720
     tttgagtatc caatggagcc aatgtataaa tttgcattgc caactatgag gaaggttatg       780
     agaaactttt ctagccaagc tgtcctcatg tatcagaata gtgttgctgc aggtaaggca       840
     tttgtgataa aagctgctag aaatgctgga tacacaagta ttgaaaataa atggctaggt       900
     atagattttc ttgccgaagc tcaattgtcc caaagtcaac ttgatatcaa gcatcagatt       960
     ctggcagcaa atgttggtag aacaaagaca aggctgtttg cattagcagc tcctggggac      1020
     gacaacaatg tagatagaga aaggcacacg acacacgatg tcagtgcaaa caggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//