Dbfetch

Dbfetch

ID   HM171302; SV 1; linear; genomic RNA; STD; VRL; 1098 BP.
XX
AC   HM171302;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Machinga 6:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Machinga 6:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1098
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1098
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; b1adf3d4c62fb1ef29bbcbf33671d440.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1098
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Machinga 6:2009]"
FT                   /host="Manihot esculenta cv. Matenje"
FT                   /isolate="MW:Mac6:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Machinga Dist., Southern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980526"
FT   CDS             <1..>1098
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIK8"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIK8"
FT                   /protein_id="ADV16250.1"
FT                   /translation="ALNQEEIEAEITALKKLWEDNGPTNMRSPFEARRLRAPQVERVNE
FT                   LLQKLKNEGLQTKKRPCGEPDDGEVVDDDSDDGNYQNYGKKVDDSQNNQQVDPRKLKFK
FT                   TRGDGSDIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRNNLTPGVIQNFLAY
FT                   IPPSHAIDNQLASGIEVENWAIKVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKNE
FT                   KSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNSVAAGKAFV
FT                   IKAARNAGYTSIENKWLGIDFLAEAQLSQNQLDIKHQILAANVGRTKTRLFALAAPGDD
FT                   NNVDKERHTTHDVSANRQSYSGAAIE"
XX
SQ   Sequence 1098 BP; 381 A; 175 C; 269 G; 273 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcactgcct taaagaagct atgggaagac        60
     aatggaccga caaacatgcg tagtccattt gaagctagga gattaagagc cccacaagtt       120
     gagcgtgtga atgagttgct tcagaaactg aagaatgaag gattgcaaac gaagaagagg       180
     ccatgtggag aaccagatga tggagaagtg gtggatgatg atagtgatga tggtaattat       240
     cagaattatg gaaagaaagt tgatgatagt caaaataatc agcaagttga tccaagaaag       300
     ctgaaattca agactagagg agatggaagt gacattagac gggatgacat tgataaaatt       360
     ccaactaatg ctcttgagat caagaagaca tttaagcctc caaaggtgtc acagtcagct       420
     tacatttgga ttccgcgctc tcaaaggaat aatctaaccc ctggtgtaat ccagaatttc       480
     ttggcatata tacctccatc tcatgctata gataaccaac ttgcttcagg aattgaagtt       540
     gagaattggg caattaaggt tgctaaagca tatggagtta atatacagga attttatcgc       600
     acagttttgc cggcctggat agtgaactgt atagtgaacg gaactagcga tgaaaggaaa       660
     aatgagaagt catggcgagc agttgagctc aattctcagg gggaagatgt tgatgacttc       720
     gagtatccaa tggagccaat gtataaattt gcattgccaa ccatgaggaa gattatgaga       780
     aatttctcta gccaagctat cctcatgtat cagaatagtg ttgctgcagg taaggcgttt       840
     gtaataaaag ctgctagaaa tgctgggtat acaagtattg agaataaatg gctaggtata       900
     gattttcttg ccgaagctca attatctcaa aatcaacttg atatcaagca tcagattttg       960
     gcagcaaatg ttggtagaac aaagacaagg ctgtttgcat tagcagctcc tggggatgat      1020
     aacaatgttg ataaagaaag gcacacgaca cacgatgtca gtgcaaacag gcaaagttac      1080
     agtggtgccg caattgaa                                                    1098
//