ID   HM171301; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171301;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Machinga 5:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Machinga 5:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; db89e27fe65e3eba41bab06023568ebc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Machinga 5:2009]"
FT                   /host="Manihot esculenta cv. Mbundumali"
FT                   /isolate="MW:Mac5:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Machinga Dist., Southern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980525"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIK7"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIK7"
FT                   /protein_id="ADV16249.1"
FT                   /translation="ALNQEEIEAEITALKKLWRDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQVDPRKPEF
FT                   KIRGDGSNIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YIPPSHAIDNQLASGIEVENWAIKVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT                   VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVSRTRTRLFALAAPGD
FT                   DNNVDKERHTTHDVSATRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 380 A; 177 C; 273 G; 271 T; 0 other;
     gccttaaatc aggaggaaat agaagcagaa atcactgctt tgaagaagct ttggagagat        60
     aatggaccaa caaggacgcg tagtccattt gaggctagga gattgagagc cccacaggtt       120
     gagcgcgtca atgagttact ccaaaaacta aaagatgaag gattgcaaac aaagaagagg       180
     ccatgtggag aaccagatga tggagaagtg gtagatgatg atagtgatga tggaaataat       240
     cagagatctg gaaaagaggt tgttgatgag agccagaaca atcagcaagt tgatccaagg       300
     aagccggaat tcaagattag aggagatgga agtaatatta gacgggatga cattgataaa       360
     attccaacta atgctcttga gatcaagaag acattcaagc ctccaaaggt gtcacagtcg       420
     gcttacattt ggattccacg ctctcaaagg gataatctaa cccctgatgt aattcagaat       480
     tttctggcgt atatacctcc atctcatgct atagataacc aacttgcttc aggaattgaa       540
     gttgaaaatt gggcaattaa ggttgctaaa gcatatgggg ttaatataca ggaattttat       600
     cgcacagtct tgccagcttg gatagtgaac tgcatagtga atggaactag tgatgaaagg       660
     aagaatgaaa agtcatggcg agcagttgag ttgaactctc agggggaaga tgttgatgat       720
     tttgagtatc caatggagcc aatgtataaa tttgcattgc caactatgag gaaggttatg       780
     agaaacttct ctagccaagc aatcctcatg tatcagaata gtgttgctgc aggtaaggcg       840
     tttgtaataa aagctgctag aaatgctgga tacacaagta ttgaaaacaa atggcttggt       900
     atagattttc ttgccgaagc tcaattgtcc caaagtcaac ttgatatcaa gcatcaaatt       960
     ctagcagcaa atgttagtag aacaaggaca aggctgtttg cattagcagc tcctggagat      1020
     gataataatg tggataaaga aaggcacacg acacatgatg tcagtgcaac taggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//