ID   HM171299; SV 1; linear; genomic RNA; STD; VRL; 1101 BP.
XX
AC   HM171299;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Rumphi 27:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Rumphi 27:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1101
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1101
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; c5e4cd271d67a4e0ecd9287c5264b780.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Rumphi 27:2009]"
FT                   /host="Manihot esculenta"
FT                   /isolate="MW:Rum27:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Rumphi Dist., Northern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980523"
FT   CDS             <1..>1101
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIK5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIK5"
FT                   /protein_id="ADV16247.1"
FT                   /translation="ALNQEEIEAVITALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGEVVDDESDDGNNQRPGKEVVDESQNNQQVDPRKPKF
FT                   KIRGDGSTIRRDDIDKIPTNALEIKKTFKPPRVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT                   YIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKN
FT                   EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT                   VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT                   DNNVDRERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1101 BP; 377 A; 179 C; 278 G; 267 T; 0 other;
     gccttaaatc aggaggaaat agaagcagtg atcactgctt taaagaagct ttggaaggat        60
     aatggaccaa caaggacgcg tagtccattt gaggctagga gattgagagc cccacaagtt       120
     gagcgcgtaa atgagttact tcagaaacta aaagatgaag ggttgcaaac aaagaagagg       180
     ccatgtggag aaccagatga tggggaagtg gtggatgatg aaagtgatga tggaaataat       240
     cagagacctg gaaaggaagt tgttgatgag agccagaata atcagcaagt tgatccaaga       300
     aagccgaaat tcaagattag aggagatgga agtactatta gacgggatga cattgataaa       360
     attccaacta atgctcttga gatcaagaag acattcaagc ctccaagggt gtcacagtca       420
     gcttacattt ggataccacg ctctcaaagg gataatctaa cccctgatgt aattcagaat       480
     ttcctggcat atatacctcc atctcatgct atagataatc aacttgcttc aggaattgaa       540
     gttgagaatt gggcaattga ggttgctaaa gcatatggag ttaatataca ggaattttat       600
     cgcacggttc tgccagcttg gatagtgaac tgtatagtga acggaactag cgatgaaagg       660
     aagaatgaga agtcatggcg agcagttgag ctgaattctc aaggggaaga tgttgatgat       720
     tttgagtatc caatggagcc aatgtataaa tttgcactgc caactatgag gaaggttatg       780
     agaaactttt ctagccaagc tatcctcatg tatcagaata gtgttgctgc aggtaaggcg       840
     tttgtaataa aagctgccag aaatgctgga tacacaagta ttgaaaataa atggctaggt       900
     atagattttc ttgccgaagc tcaattgtcc caaagtcaac ttgatatcaa gcatcagatt       960
     ctggcagcaa atgttggtag aacaaagaca aggttgtttg cattagcagc tcctggggat      1020
     gacaacaatg tagatagaga aaggcacacg acacacgatg tcagtgcaaa caggcacagt      1080
     tacagtggtg ccgcaattga a                                                1101
//