ID   HM171298; SV 1; linear; genomic RNA; STD; VRL; 1098 BP.
XX
AC   HM171298;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Karonga 18:2009] coat protein
DE   gene, partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Karonga 18:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1098
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1098
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; a6e1a6ac26947a8ae67d7d9bb1535ffc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1098
FT                   /organism="Ugandan cassava brown streak
FT                   virus-[Malawi:Karonga 18:2009]"
FT                   /host="Manihot esculenta cv. 20:20"
FT                   /isolate="MW:Kar18:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Karonga Dist., Northern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980522"
FT   CDS             <1..>1098
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIK4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIK4"
FT                   /protein_id="ADV16246.1"
FT                   /translation="ALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAPQVERVNE
FT                   LLQKLKDEGLQTKKRPCGEPDDGEFVDDDSDDGDNQNSGKKVDDSQSNQQVDPRKPKFK
FT                   IRGDGSTIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLAY
FT                   IPPSHAIDNQFASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKNE
FT                   KSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVVAGKAFV
FT                   IKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGDD
FT                   NNVDKERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1098 BP; 381 A; 173 C; 269 G; 275 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcactgctt taaagaagct gtggaaagac        60
     aatggaccaa caagaacgcg tagtccgttt gaagctagga gattgagagc accacaagtt       120
     gagcgtgtga atgagttact tcagaaatta aaagatgaag gactgcaaac aaagaagagg       180
     ccatgtggag aaccagatga tggggaattt gtagatgatg atagtgatga tggtgataat       240
     cagaattctg gaaagaaagt tgatgatagt cagagtaatc agcaagttga tccaaggaag       300
     ccaaaattta aaattagagg agatggaagt accattagac gggatgacat tgataaaatt       360
     ccaactaatg ctcttgagat caagaagaca tttaagcctc caaaggtgtc acagtcagct       420
     tacatttgga ttccgcgctc tcaaagggac aatctaaccc ctgatgtaat tcagaatttc       480
     ctggcgtata tacctccgtc tcatgctata gacaaccaat ttgcctcagg aattgaagtt       540
     gagaattggg caattgaagt tgcaaaagca tatggagtta atatacagga attttatcgc       600
     acagttttac cagcttggat agtgaattgt atagtgaatg gaactagcga tgaaaggaaa       660
     aatgagaagt catggcgagc agttgagctg aattctcagg gggaagatgt tgatgatttc       720
     gagtatccaa tggagccaat gtataaattt gcattgccaa ccatgaggaa ggttatgaga       780
     aacttctcta gccaagctat cctcatgtat cagaatagtg ttgttgcagg taaggcgttt       840
     gtaataaaag ctgctagaaa tgctgggtat acaagtattg agaataaatg gctaggtata       900
     gattttcttg ccgaagctca attatctcag agtcaacttg atatcaagca tcagattctg       960
     gcagcaaatg ttggtagaac aaagacaagg ctatttgcat tagcagctcc tggagatgat      1020
     aacaatgttg ataaagaaag gcacacgaca cacgatgtca gtgcaaacag gcacagttac      1080
     agtggtgccg caattgaa                                                    1098
//