ID   HM171296; SV 1; linear; genomic RNA; STD; VRL; 1134 BP.
XX
AC   HM171296;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak virus-[Malawi:Karonga 9:2009] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Cassava brown streak virus-[Malawi:Karonga 9:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1134
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1134
RA   Bagewadi B., Yadav J.S., Alicai T., Patil B.L., Ogwok E., Mkumbira J.,
RA   Changadeya W., Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 3df1458c930ee3700d3cde9d81824b24.
DR   EuropePMC; PMC6472602; 31007377.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1134
FT                   /organism="Cassava brown streak virus-[Malawi:Karonga
FT                   9:2009]"
FT                   /host="Manihot esculenta"
FT                   /isolate="MW:Kar9:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Karonga Dist., Northern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980541"
FT   CDS             <1..>1134
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIK2"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIK2"
FT                   /protein_id="ADV16244.1"
FT                   /translation="AIDKDEIEAEITKLKELWRNNKPTRTRSPFESKRLRAPQVARVNE
FT                   LLKQLKDAGMQTSKRPCGEPDEGEVASPESSEDEEQQIIKGKAPMESPTEQNQSEKPIG
FT                   EEEEKHKKTRFRIRAGGGSEKRDDIDKIPTNALEFRKSFKPPKVSQAAYLWIPRSQRDN
FT                   LTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTILPAWIVNC
FT                   IVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKVMRNFSSQAILM
FT                   YQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRSK
FT                   TKLFALAAPGDDDNVDKERHTTRDVSATRHSYAGAAIE"
XX
SQ   Sequence 1134 BP; 395 A; 195 C; 280 G; 264 T; 0 other;
     gcaattgaca aggatgagat tgaagctgaa ataacaaagt tgaaagaatt atggaggaac        60
     aacaagccaa ctagaactcg aagtccattt gaatcaaaga ggcttcgtgc tcctcaagta       120
     gcccgtgtga acgaactgct taaacagctg aaagatgctg ggatgcaaac aagtaaaagg       180
     ccatgtggag aacctgatga aggagaagtt gctagcccag aatcaagtga agacgaggag       240
     caacaaataa tcaaaggaaa agcgcctatg gaatcaccta ctgaacagaa tcaatcagag       300
     aagcctatag gtgaggagga ggagaaacat aagaaaacaa ggttcagaat tagagctggt       360
     ggtggaagtg aaaagagaga tgatatagat aaaattccaa ccaacgctct agaatttcgg       420
     aagagcttca aaccaccaaa agtgtcacaa gcagcatatt tgtggatacc gcgttcgcaa       480
     agagataatt tgacacctga tgtcatacag aactttctag cgtacgtgcc tccatcacat       540
     gctatagaca atcaattggc ttccggagtt gaagttgaga attgggccat cgaagtttca       600
     aaagcttatg gagtcaccat tcaagagttt tataggacga tcctacctgc ttggattgtc       660
     aattgtatcg tgaatgggac tagcgatgaa aggaagaatg agaagtcgtg gagagctgtt       720
     gagctaaatg cacagggtga ggatattgat gattcagagt atcctatgga accaatgtat       780
     aaatttgctc tcccgacaat gaggaaagta atgagaaatt tttccagcca agcaattcta       840
     atgtatcaga atagtgtgac tgctggaaaa gcttttgtaa taaaagcagc tcgaaatgcc       900
     gggtatacaa gcattgaaaa caagtggttg ggtattgact tcctagccga ggcacaactg       960
     tcacaaagcc aacttgatat caaacatcaa atattggctg ctaatgttgg tagaagtaaa      1020
     actaagttgt tcgctttagc tgctcctggt gacgatgata atgtggataa agaaaggcac      1080
     actacgcggg atgttagtgc gactaggcat agctatgcag gtgctgctat tgaa            1134
//