Dbfetch
ID HM164543; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HM164543; XX DT 07-SEP-2010 (Rel. 106, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Tobacco leaf curl virus isolate TLCV-Korea-IS-HS, complete genome. XX KW . XX OS Tobacco leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2763 RA Lee H.J., Song W.G., Kwak H.R., Kim J.D., Kim M.K., Park J.A., Lee S.C., RA Choi H.S.; RT "Molecular phylogenetic relationships of Tomato Yellow Leaf Curl Virus RT (TYLCV) and Bemisia tabaci"; RL Unpublished. XX RN [2] RP 1-2763 RA Kim M.K., Kwark H.R., Kim J.D., Lee H.J., Park J.A., Lee S.C., Choi H.S.; RT ; RL Submitted (29-APR-2010) to the EMBL/GenBank/DDBJ databases. RL Departement of Agricultural Biology, Agricultural Microbiology Division, RL National academy of Agricultural Science, RDA, 150, Suinro, Kwoenseon-gu, RL Suwon, Gyeongi-do 441-707, Repubilc of Korea XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Tobacco leaf curl virus" FT /host="tomato" FT /isolate="TLCV-Korea-IS-HS" FT /mol_type="genomic DNA" FT /country="South Korea" FT /collection_date="Sep-2008" FT /db_xref="taxon:67762" FT CDS 138..479 FT /codon_start=1 FT /product="movement protein" FT /note="V2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E0YU56" FT /protein_id="ADM47721.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTVGYDLIRDL FT IGVIRAKNYVEATCRYRDFHSRLQGTAPSELRQPVCQPCECPHCPRHKQKEIVGSKAHV FT QEAQDVSNV" FT CDS 298..1071 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:E0YU39" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E0YU39" FT /protein_id="ADM47720.1" FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYANRASAPIALVTNKRRSW FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMFENE FT PSTATVKQELRDRLQVLHRFSATVTGGQYASKEQAVIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMAATHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1068..1472) FT /codon_start=1 FT /product="replication enhancer protein" FT /note="C3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E0YU58" FT /protein_id="ADM47722.1" FT /translation="MDSRTGVTITAAQAWNGAYIWTVPNPLYFKITKHAQRPFNMDQDI FT ITLQIQFNHNLRSHLGLHKCFLTFNIWTHLHPQTSHFLRVFRTQVLKYLDNLGVISINN FT VIRAVDHVLYNVLEGTEYVQTLHDIKFKLY" FT CDS complement(1213..1620) FT /codon_start=1 FT /product="transactivator protein" FT /note="C2" FT /db_xref="GOA:E0YU59" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0YU59" FT /protein_id="ADM47723.1" FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLICGCSIYVAL FT GCANHGFTHRGHHHCSSGMEWRVYLDRAQSPIFQNHEARTTTIQHGPGHNNSTDTIQPQ FT PQISSGSTQVLPDLQYLDSLTSSDLAFLEGI" FT CDS complement(1520..2611) FT /codon_start=1 FT /product="replication associated protein" FT /note="C1" FT /db_xref="GOA:E0YU60" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E0YU60" FT /protein_id="ADM47724.1" FT /translation="MAPPKRFKINSKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR FT ICRELHEDGSPHLHVLIQFKRKYQCTNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKTYM FT EKDGDVIDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALCILREKAPKDFVLQFH FT NLNSNLDRIFAPPLEEFVCPFLSSSFDQVPEELEAWAAENVRDSAARPWRPVSIVIEGD FT SRTGKTMWARSLHPRHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNATFVTLYGS FT LYSGTHQGATQVREEESTSQTED" FT CDS complement(2161..2454) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0YU61" FT /protein_id="ADM47725.1" FT /translation="MGVLISTSSSNSKENTNAQINDSSISYPHLGQHISIQTFRELRAR FT QMSRPTWKKTETSLILEFSKSMEDQLEEVASLQTTHMPRQSTQGPNHRHSVY" XX SQ Sequence 2763 BP; 722 A; 552 C; 646 G; 843 T; 0 other; accggatggc cgcccgaaat ttcgtggtgg tccccccctt gtcggccaat gagatttgtg 60 ctgtggaagt aagataagtg gaaagtgacg tacgcttttg tctttatata cttcaaccct 120 aattttaacg gtgtgagatg tgggatcctt tacttaacga tttccctgaa accgttcacg 180 gtttcaggtg tatgctagcg gttaaatatc tccttcttgt agaggctacg tattctccgg 240 atacggtggg ttacgatctg atccgtgatc ttattggtgt gattcgtgcc aagaattatg 300 tcgaagcgac ctgcagatat agggattttc actcccgtct ccaaggtacg gcgccgtctg 360 aacttcgaca gcccgtatgc caaccgtgcg agtgccccca ttgccctcgt cacaaacaaa 420 aggagatcgt gggctcaaag gcccatgtac aggaagccca ggatgtatcg aatgtataga 480 agcccagatg tccctaaggg gtgtgaaggc ccatgtaagg tccagtcctt tgagaagaaa 540 aatgatgtgg gtcattctgg taccctgctc tgtgtgtctg atattacccg tggtaatggg 600 cttactcatc gtgttgggaa gagattttgt ataaaatctg tttatattat tggtaaaata 660 tggatggatg aaaatattaa gaccaagaat cacactaaca acgtgttatt ctggttagtt 720 agagatagaa gacctggttc aacgccatat ggttttcagg aggcatttaa tatgtttgag 780 aatgaaccca gtacggccac agttaaacag gaattaaggg atcgtttgca ggttttacac 840 aggtttagtg caaccgttac tggtgggcaa tatgcgtcta aggaacaagc tgttataaag 900 agattttgga agttgaatca ccatgtcact tacaatcatc aagagcaggc taaatatgag 960 aatcatacgg aaaatgcttt attattgtat atggctgcta ctcatgccag taatccagtg 1020 tatgctacct taaaaatcag agtgtatttc tacgattcag tacagaatta ataaagtttg 1080 aattttatat catgaagtgt ttgtacatac tctgttccct ctaatacatt atacaataca 1140 tgatcaactg ctctaattac attgttaatt gaaattacac ccaaattatc taagtacttc 1200 aacacttggg tcctaaatac cctcaagaaa tgcgaggtct gaggatgtaa gtgagtccaa 1260 atattgaagg tcaggaagca cttgtgtaga cccagatgag atctgaggtt gtggttgaat 1320 tgtatctgta gagttattat gtcctggtcc atgttgaatg gtcgttgtgc gtgcttcgtg 1380 attttgaaat ataggggatt gggcacggtc cagatatacg cgccattcca tgcctgagct 1440 gcagtgatgg tgacccctgt gcgtgaatcc atggtttgcg caacccaatg cgacgtaaat 1500 agaacacccg caaatcagat caatcctccg tctgcgaggt gctctcctct tctctgacct 1560 gtgtcgcacc ttgatgggta cctgagtaga gtgagccgta gagggtgacg aaggttgcat 1620 ttttaattgc ccatgctttt agggctgcgt tcttgtcctc gtctaaatac tccgtgtatg 1680 atgatgttgg gcctggattg cataggaaga ttgttgggat accaccttta atttgaattg 1740 gtttcccgta cttggtgttg ctttgccagt ccctttgggc ccccatgaac tccttaaagt 1800 gctttaagta gtggggatcc acatcatcaa tgacgttgta ccaagcgtcg ttgctgtaaa 1860 ccttggggct taagtcaaga tggccacata gatagttatg acgtggatgt agtgacctgg 1920 cccacatagt cttccctgtc ctgctatccc cctctatcac aatactcacg ggtctccacg 1980 gccgcgcagc ggaatcccta acattctcgg cagcccatgc ctcaagttcc tctggaactt 2040 gatcaaaaga agaagataaa aatggacaaa caaattcctc caacggagga gcaaaaatcc 2100 tatctaaatt actgtttaaa ttgtgaaact gtaaaacaaa atctttggga gctttctccc 2160 ttaatataca gagtgccgat gatttggacc ctgagttgat tgcctcggca tatgcgtcgt 2220 ttgcagactg gcaacctcct ctagctgatc ttccatcgac ttggaaaact ccaaaatcaa 2280 tgacgtctcc gtctttttcc atgtaggtct tgacatctga cgagctctta gctccctgaa 2340 tgtttggatg gaaatgtgct gacctagatg gggatacgag atcgaagaat cgttgatttg 2400 tgcattggta ttttcttttg aattggatga ggacgtggag atgaggactc ccatcttcgt 2460 gtaattctct gcagattcgg atgaataatt tatttgttgg tgtttctagg gcttgaattt 2520 gggaaagggc ttcttccttt gttagagagc agtgtgggta tgtgaggaaa taatttttgc 2580 tatttatttt aaaacgcttg ggtggtgcca taattacaaa tatgcccttg taccccgatt 2640 gggagagaac tcttctttgc tgtgtatcgg tgtaatgggg tacaatatat actccttgtg 2700 tttttacttt tgaattttga aattcaaaat tcaaattggt aaagcggcca tccgtataat 2760 att 2763 //