ID HM163159; SV 1; linear; genomic RNA; STD; VRL; 4003 BP. XX AC HM163159; XX DT 14-SEP-2010 (Rel. 106, Created) DT 21-OCT-2010 (Rel. 106, Last updated, Version 2) XX DE Sowbane mosaic virus isolate SoMV-WA, complete genome. XX KW . XX OS Sowbane mosaic virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4003 RX DOI; 10.1007/s00705-010-0820-z. RX PUBMED; 20922437. RA Eastwell K.C., Villamor D.V., McKinney C.L., Druffel K.L.; RT "Characterization of an isolate of Sowbane mosaic virus"; RL Arch. Virol. 155(12):2065-2067(2010). XX RN [2] RP 1-4003 RA Eastwell K.C., Druffel K.L.; RT ; RL Submitted (29-APR-2010) to the INSDC. RL Plant Pathology, Washington State University, 24106 North Bunn Road, RL Prosser, WA 99350, USA XX DR MD5; 2e7fe8d770116c26af393daaa3afd7fc. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..4003 FT /organism="Sowbane mosaic virus" FT /host="Chenopodium quinoa (Willd.)" FT /isolate="SoMV-WA" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Feb-2009" FT /db_xref="taxon:378833" FT CDS 81..575 FT /codon_start=1 FT /product="ORF1" FT /note="putative movement and suppressor protein" FT /db_xref="UniProtKB/TrEMBL:E0YU12" FT /protein_id="ADM93280.1" FT /translation="MKFTLNLRSIGPNQIETSKTYISSCEFFPDCDFEVNSLVALVRNV FT KSFGVKHWTAGPSVRLWNLYESAFQDHAKHHYIAFEVVCAFCDQVFQTTPTPSSQISGC FT WPVFVDGVNRGIVTTARRKEAEVVQGKPDCYIVRFSSTCKECIVHRLATSYCSSASQLE FT Q" FT CDS join(515..1711,1711..3303) FT /codon_start=1 FT /ribosomal_slippage FT /product="ORF2" FT /note="putative serine-protease; VPg and RdRp polyprotein" FT /db_xref="GOA:E0YU13" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E0YU13" FT /protein_id="ADM93281.1" FT /translation="MHRSPFGYLLLLISLPAGAVTYDCVRGDCPAGPNCLMMALMTLLT FT TGMWGIVSLSLYWIERQRYRSAEEKISRPKRLRLIGDPYLDPCDGIVGKILDDCTGSVQ FT EVVIQPKWWRFINMSSPTINQDEDNECAILGNSYSKVEPHREPGSFVLLKVNEEVVGAG FT CRVIYDGGDYLLTAHHVWSQAPSHIAKGGKTVEISAEMKPHLSSKNKELDFCLVPIPAA FT VWSNLGVKSSKIASLHQRSNVTVYGGTASKMLLSSFGVAEADDNPLRIIHKASTARAWS FT GSPLYNSNGLVLGVHLGYDQLGPTNRAVNIGYVLRITTSNETAPPDLNFIEITEDEAVD FT RPSFDEYEIEGFGKIRTRAREYYIPRDKDWNKYDDEDDDAFFDVPVALWLNSNETVEKP FT FKLQRGRKFSALAALIELGNYSWESGGHYPQGVGLQFVGRSTCFFRESSRKALSERFKL FT ASETFPELLDYNWPARGSKAELGSLLLQAERFRCTEPPENLASCCDKLASRYPVTRPRC FT CFRTDKWSWSAVEEEVKRLAAQGQEVCKDSSPGSPLASLCKRNQDVLAAHLDFIVKAVT FT ERLFLLAETELHGLSPVELINQGCCDPVRLFVKQEPHTLKKIDEGRYRLISSVSLVDQI FT VERMLFGPQNRAEIALWDTIPSKPGMGLTLKSQARKIFGDLLVKHTHCPAYEADISGFD FT WTVQDWELWADVEIRIKLCSAGVNLAQCMRNRFYCFMNSVFQLSDGTLIQQCSPGVMKS FT GSYCTSSTNSRVRCLMAEIIGSPWCIAMGDDSVEGYVEGARDKYDALGHKCKDYQVCDS FT DGLLLRSVGFCSHHIDSSGAYLTSWAKTLFKHLHSKDEDFQDIEIELRNSPMWPSIRRY FT LVQETPSLDKRYEPNEEEEVQTTEQTVESTAKQVHSASCFTTCCERNCYGQGYACVQW" FT CDS 1986..2186 FT /codon_start=1 FT /product="ORF3" FT /db_xref="UniProtKB/TrEMBL:E0YU14" FT /protein_id="ADM93282.1" FT /translation="MHRAPRKPRQLLRQARQQVPSYPAPLLLQNRQMVLVSSRRRSQEA FT RGARARSLQRLQPRQPTSLFM" FT CDS 3161..3886 FT /codon_start=1 FT /product="ORF4" FT /note="coat protein" FT /db_xref="GOA:E0YU15" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E0YU15" FT /protein_id="ADM93283.1" FT /translation="MNQTKKKKSRPRNKQSKAQPNKSTAQVVSQPAAKGIVMGRAMPVF FT NGKAGVLRLRHHEILQTIVSTTDKYTVRSVNLVPTNFSWLSGVAVNFSKWKWHALNLVY FT VPACSTSVQGNIDMALQYDGNDIPATTPEELSVMYGHSGGPVWSGTAGCRLLDNATMSG FT RGKPPEAIATIVDVSKFSKSNYLYRSGALSGDSQTIYCPCDLQYGVTAGITPTVGAIGY FT IWATYDVEMFEPLPARLNK" XX SQ Sequence 4003 BP; 1025 A; 956 C; 1020 G; 1002 T; 0 other; accaaaatat aagaaccgaa gtgtaatgtt cgtgccattt ccagacgtat tgcaaaatac 60 agctgttggc tttaaagtaa atgaaattca cgcttaatct cagaagcatc ggaccaaacc 120 agattgagac aagcaagact tacatttcca gttgtgaatt ctttcctgac tgtgatttcg 180 aagtcaactc tctggttgct ctagtgcgta acgttaagtc cttcggagtt aagcattgga 240 cggcaggacc cagtgtgcgg ttgtggaatc tgtacgaaag tgcattccaa gaccacgcta 300 agcaccacta catcgcgttt gaagtggttt gcgcgttctg tgaccaggtg tttcagacga 360 ctccaacacc gtcgagtcaa atctccggtt gttggccagt gttcgttgac ggagttaaca 420 gaggaattgt cacgactgcg cgccgaaagg aagccgaagt cgtacaaggt aaacccgact 480 gttacatcgt ccgattttcg tccacctgta aagaatgcat cgttcaccgt ttggctacct 540 cctactgctc atcagcctcc cagctggagc agtgacttac gattgcgtgc gaggggactg 600 cccagcagga cccaactgtc tgatgatggc tctgatgact ctgctcacta caggaatgtg 660 ggggatagtc tctctaagcc tatactggat agagcgacag cgttatcgct cagccgaaga 720 gaagatctca cggccgaagc gattgcggct cattggcgat ccttacttgg atccctgtga 780 tggaatcgtc gggaagatcc tcgatgattg caccgggtca gtacaagagg tcgtaataca 840 acctaagtgg tggcgtttca taaatatgtc ttcccctacg ataaatcagg atgaagacaa 900 cgaatgcgct atcctgggca acagctactc aaaagttgag ccccaccgtg aacccggtag 960 cttcgtgctg cttaaggtta acgaagaggt tgttggcgct ggatgtcgag taatttacga 1020 cggaggtgat tacctcttga ctgcgcatca tgtgtggtcc caagcaccta gtcatatagc 1080 gaaaggtggg aaaaccgtgg aaatatccgc tgagatgaaa ccccacctct cgtctaagaa 1140 taaggagctg gacttctgtc tagtacccat tccagctgct gtgtggtcta atcttggagt 1200 caaatccagt aagatcgcga gtttgcatca gcgctcaaat gttacagtat acggaggcac 1260 tgcctcgaaa atgctgttga gcagctttgg cgtcgctgag gctgatgata atccattgcg 1320 gataattcat aaagcctcca ctgcaagagc ctggagtggg tctccgttat acaattctaa 1380 tggcttggtc ctaggcgtcc atcttggtta cgaccagctt ggcccaacaa acagagcggt 1440 taacatcggt tatgtgttga gaattacgac tagcaacgag acagctcccc cagacttgaa 1500 ctttattgag attactgagg atgaagcagt tgaccggcct agttttgatg agtatgaaat 1560 cgagggcttt gggaagatta gaacccgagc ccgcgaatac tacataccac gagacaagga 1620 ttggaataag tatgacgatg aagacgatga tgccttcttt gatgttcccg tggctctctg 1680 gttgaattcc aatgagaccg ttgagaagcc tttaaacttc aaaggggccg caagttctcc 1740 gcgcttgccg cccttattga gctcgggaat tactcctggg aaagcggagg acactatccg 1800 cagggagtcg gactacaatt tgttggtagg tcgacttgtt tctttagaga gagctctaga 1860 aaagctctct cagagcgttt taaacttgca agtgaaacct tcccagagct gcttgactac 1920 aactggccag cacgaggatc gaaagctgag cttggctcgc tcctcctcca agctgagcgg 1980 ttcagatgca ccgagccccc agaaaacctc gccagctgtt gcgacaagct cgccagcagg 2040 tacccagtta cccggccccg ttgttgcttc agaaccgaca aatggtcttg gtcagcagtc 2100 gaagaagaag tcaagaggct cgcggcgcaa gggcaagaag tctgcaaaga ctccagcccc 2160 ggcagcccac tagcctcttt atgtaagaga aatcaagatg tattggcagc tcatcttgat 2220 tttattgtga aagctgtcac ggagagattg tttcttttgg ccgagactga attgcacggc 2280 ctcagtcctg tcgagttaat taatcaaggt tgctgtgacc ccgtgagact ctttgttaaa 2340 caagagcctc acacgttgaa gaaaatcgac gagggacgct acagattgat cagttcagtg 2400 agtttggtag accagatcgt cgagcgtatg ctcttcgggc ctcagaaccg agctgagata 2460 gctctctggg ataccattcc ttcgaagccc ggcatggggt taacacttaa aagtcaggcg 2520 aggaagatct ttggtgatct actcgtcaag cacacccatt gcccggcata tgaagccgac 2580 atatcgggtt tcgactggac tgtccaggac tgggaactgt gggctgacgt tgagattaga 2640 atcaagctat gcagtgctgg agttaacctc gcacaatgca tgcgcaatcg tttctattgc 2700 ttcatgaatt cagttttcca gctctccgat ggaacactta ttcaacagtg ttcgccgggt 2760 gttatgaagt caggatcgta ctgtacttcc tccaccaact ccagagtccg ctgccttatg 2820 gcagagatca ttggatcccc atggtgtata gccatgggtg acgactctgt tgaggggtac 2880 gttgagggag ccagagataa atacgatgcc ctaggacaca aatgtaagga ctatcaagtt 2940 tgtgactccg atggattgct tcttcggtcc gtcggatttt gttcacacca cattgattcc 3000 tcaggggctt acctgacatc ttgggccaag acgctgttta agcaccttca ttctaaggat 3060 gaggatttcc aggacatcga gattgagtta cgcaactctc cgatgtggcc cagcatccga 3120 agatatctag tccaagaaac tccgtcattg gacaaaagat atgaaccaaa cgaagaagaa 3180 gaagtccaga ccacggaaca aacagtcgaa agcacagcca aacaagtcca cagcgcaagt 3240 tgtttcacaa cctgctgcga aaggaattgt tatgggcagg gctatgcctg tgttcaatgg 3300 taaggcgggc gttctccgtc ttcgtcacca tgagatatta caaacgatag tctccaccac 3360 tgacaaatat actgttagat cggttaacct agtcccaact aacttcagct ggttgagtgg 3420 cgtggccgtt aacttcagta agtggaagtg gcatgcactg aacctagttt atgtgcctgc 3480 ttgttccaca tctgtacaag ggaacattga catggctctt caatatgatg gtaatgatat 3540 accagctacc acgcctgagg agctttctgt catgtatgga cactccgggg gaccagtatg 3600 gtccggtacc gcagggtgcc gtctcctaga caatgccact atgtctggtc gaggcaagcc 3660 tccggaggcg atcgctacta ttgtggatgt ttctaagttc tccaagtcga attatctata 3720 tcgatctgga gcgcttagtg gcgattcgca gaccatatat tgcccttgtg atctacagta 3780 tggcgtcaca gcaggcatca cgcctacagt tggagccatc ggctatatct gggcgacgta 3840 tgacgttgag atgttcgagc cactccccgc aaggctcaat aaataagcag ggagctccag 3900 cagttggaag agctggagca gtttcacttc cagtgattgc aagacacact cttcttgcac 3960 gggtatcaca gccggactgt ggtgtgtggt tctccagagt ttt 4003 //