Dbfetch

Dbfetch

ID   HM160503; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
XX
AC   HM160503;
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DT   28-MAY-2012 (Rel. 112, Created)
DT   28-MAY-2012 (Rel. 112, Last updated, Version 1)
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DE   Citrus tristeza virus isolate Linstead4 coat protein gene, complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; Riboviria; Closteroviridae; Closterovirus.
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RN   [1]
RP   1-672
RA   Fisher L.C., Tennant P.F., McLaughlin W.A.;
RT   "Molecular characterization of the coat protein gene of some biological
RT   Jamaican Citrus tristeza virus isolates";
RL   Unpublished.
XX
RN   [2]
RP   1-672
RA   Fisher L.C., Tennant P.F., McLaughlin W.A.;
RT   ;
RL   Submitted (28-APR-2010) to the INSDC.
RL   Life Sciences, University of the West Indies, Mona Campus, 2 St. John's
RL   Close, Kingston 7 0, Jamaica
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DR   MD5; 84994388fb8a1f5d875fe6ed34e873bc.
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FH   Key             Location/Qualifiers
FH
FT   source          1..672
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus sp."
FT                   /strain="severe"
FT                   /isolate="Linstead4"
FT                   /mol_type="genomic RNA"
FT                   /country="Jamaica"
FT                   /collection_date="Mar-2007"
FT                   /db_xref="taxon:12162"
FT   CDS             1..672
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:I3NR75"
FT                   /db_xref="InterPro:IPR002679"
FT                   /db_xref="UniProtKB/TrEMBL:I3NR75"
FT                   /protein_id="AEG77336.1"
FT                   /translation="MDDETKKLKNKNKEAKEGDDVVAAESSFGSVNLHIDPTLITMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT
FT                   YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT                   R"
XX
SQ   Sequence 672 BP; 195 A; 124 C; 171 G; 182 T; 0 other;
     atggacgacg aaacaaagaa attgaagaac aaaaacaagg aagcgaaaga aggcgacgat        60
     gttgtagctg ccgagtcttc tttcggttcc gtaaacttac acatcgatcc gactttgata       120
     acgatgaacg atgtgcgtca gttgggcacc caacagaacg ctgctttgaa cagagactta       180
     ttccttactt tgaaagggaa gtatcctaac ttacctgata aagataagga ctttcacata       240
     gctatgatgt tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc       300
     acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgataa actttggact       360
     gacgtcgtgt ttaactctaa gggtattggt aaccgtacta acgcccttcg agtttggggt       420
     agaactaacg atgcccttta cttagctttt tgcagacaga atcgcaattt gagttatggc       480
     ggacgtccgc tagacgcagg gattccggcc gggtatcatt acttgtgtgc ggatttcttg       540
     actggagctg gtttgactga cttagaatgt gctgtgtaca tacaagctaa agaacaatta       600
     ttgaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct tgggaaattt       660
     aacacacgtt ga                                                           672
//