ID HM159264; SV 1; circular; genomic DNA; STD; VRL; 8302 BP. XX AC HM159264; JF421558; XX DT 21-JUN-2011 (Rel. 109, Created) DT 06-OCT-2011 (Rel. 110, Last updated, Version 2) XX DE Blueberry red ringspot virus isolate Darrow 5, complete genome. XX KW . XX OS Blueberry red ringspot virus OC Viruses; Ortervirales; Caulimoviridae; Soymovirus. XX RN [1] RP 1-8302 RX DOI; 10.1007/s00705-011-1077-x. RX PUBMED; 21796400. RA Petrzik K., Pribylova J., Plesko I.M., Spak J.; RT "Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) RT isolates from the Czech Republic and Slovenia"; RL Arch. Virol. 156(10):1901-1903(2011). XX RN [2] RP 1-8302 RA Petrzik K., Pribylova J.; RT ; RL Submitted (27-APR-2010) to the INSDC. RL Department of Plant Virology, Biology Centre As Cr, V.V.I., Institute of RL Plant Molecular Biology, Branisovska 31, Ceske Budejovice 370 05, Czech RL Republic XX DR MD5; 8c39328cb1bc40ab97cad41673cc6e2f. DR EuropePMC; PMC3289790; 21987074. XX FH Key Location/Qualifiers FH FT source 1..8302 FT /organism="Blueberry red ringspot virus" FT /host="Vaccinium corymbosum (blueberry highbush)" FT /isolate="Darrow 5" FT /mol_type="genomic DNA" FT /country="Czech Republic" FT /collection_date="2009" FT /db_xref="taxon:172220" FT CDS 48..608 FT /codon_start=1 FT /product="B" FT /db_xref="UniProtKB/TrEMBL:F8QWL2" FT /protein_id="AEH95570.1" FT /translation="MEIPDLSQLSNIVLTDNPGTNPGIPYKGKIISIPKNLLPEKTEYS FT LAYDGSHEQRILPMLRFITAILNNQTEILSFLSINQIKSGTVFTEKYFEEQKNNISIQL FT EQNRKNIFQKLEELKGLYDKKQDTIIQHSNRIINLITEIEHKKDLDEIKNTLKEIKKDL FT IDNNNQKEVKELIESLKDISDRI" FT CDS 608..1207 FT /codon_start=1 FT /product="C" FT /db_xref="UniProtKB/TrEMBL:F8QWL3" FT /protein_id="AEH95571.1" FT /translation="MTEGNGNGKLTEKIENMILKYEELEKVVKQVSQEIHEIKEQVEVE FT NDIKDFNESKYYNNTIRGNAKPTKEMIIDNNQKPCYQTDSPFPHLYHTFDPQLNNITDM FT LMYIIKNCCCKNKHEQKEKQPIIHPKILDEKDRQIKDLEEHIRELEEHRCITILDLKKY FT FGNKVNEREDKKPIEYIEDQSRPSYRGRKPLWPQII" FT CDS 1189..2676 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F8QWL4" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:F8QWL4" FT /protein_id="AEH95572.1" FT /translation="MATNNLMETMKPEMIDQQIEEIRNIMNNLKIEKTEENEIIFGNES FT ENSDYDVRMDDVKQEPGTSNFEERWKRKRNSNYEYEPYNTDPFINAEDYGYKRGFYKNR FT EGKWKKPKEPGPVTGRLEDGILNLDCLTNGEELLKQWTAKQSLSTQIDATIRDMDAENY FT NKYLIYKTSGVVFNYIVDIDIPNISSMKNLEILEEIATKIYQEFLGGMSTQRATAADKH FT DQERVKYILHKMKICDMCEFEEFYCQFIHYYYMLESSERSAYMNIFIQKLPYPLSKTIN FT DEFQNQKNANLIPDTLGGIAKVIRAYILLQCTKEQEKMQLINVTKCCPKFEYIPHKFGC FT SPNSSRRGRRTTKKSKYSKYYKQRKYHTFKPWYKKKRYRMYKRKYQPKYRQRYWKNKSN FT QKYCPKGKKECKCWICQEDGHYANECPNKDKRRDKVKLLEQLSQVNLEPIENDILSEEE FT LWYLQTDEESEEESSSNESEQYFYQNNDQSEDDISIY" FT CDS 2582..4585 FT /codon_start=1 FT /product="reverse transcriptase" FT /db_xref="GOA:F8QWL5" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F8QWL5" FT /protein_id="AEH95573.1" FT /translation="MKSQKKKVVQMNQNNTFIKITISQKTILAYIDTGASLCLLPEYNL FT PKLLWKELKKPITIRVADKRELQITKVALMITILIEKRKFLVPTIYQFDSGVPMIIGNN FT FLRLYYPFCQYLSYITLRCPKMINQKQEVIKIPIHHSSQLIKAKLLNLVTNIEEQLLME FT QVNKILQERFSLDLLGEKNKNKELIEIKLKDPNAEIFVPNNIPYTQRDIEEFKEDMEDL FT INKGLIRPSKSPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIGTPKTLPRSDYIMN FT RLKGKIWFSTLDVKSAYWQLRLTEESKPLTAFSYPPQKHYEWNVLPMGLKQAPGIFQEF FT MNRSLHNLEHICLVYVDDIIIFSEKDKNDHLSKVLQVLKRCEDEGIILSQPKAKIAHKE FT IDFFGLHISEGEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYISEKGFIKNFAKYR FT KELQKKVSEKVPWKWTSYDTTQVQALKALCQRLPKLYNAKESDLLIIATDASNGHWGAV FT MTAVTPVYINNYGISIEDLFPKEQHTAQALSSQYQFFGTKDFVQKELLTKYASGTFTDT FT EKRYPIHELETLAVLQTFRKWKVDLLSKPFILKTDSKYVTGFLRYKIKANYNQGRLIRW FT QLELSQFSYRTFYIKGSENYGPDTLTREWKEL" FT CDS 4570..5853 FT /codon_start=1 FT /product="translational transactivator" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:F8QWL6" FT /protein_id="AEH95574.1" FT /translation="MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILSG FT DSSKLSPSAPEEKKYSVLANIEEVNKQVAAAKSKKEYYVIFNGPMKGIYDEWHKAAPHI FT QGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQTI FT ESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTIYEL FT FKNGLADTIYFSDSKVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHPTFSIQGEED FT MPSYSVLQIGISNGDMPLMDTHHMPIPKHEELKQINLQNFIGVINHLSNLTANIKMLYK FT SDTMIIYSKATKEIEPDQEAVFIEFEKNFIENKIPKMPGEMKKELCNHMTKEDHPGHYC FT QYCPFIQQDDNKSASSEDEGKITMEVEE" FT CDS 6351..6812 FT /codon_start=1 FT /product="unknown" FT /db_xref="InterPro:IPR021109" FT /db_xref="UniProtKB/TrEMBL:F8QWL7" FT /protein_id="AEH95575.1" FT /translation="MSNQITLLNNYYLQYYIIGIVNERIRLILIDTGAAMSFIKQSFVH FT QESLTPIQPYTVKGYLDHHTIGDKYLVEHSTNINVILSNTFNKTLLLKTTQTKADVLGA FT EVLFGMDFLDSFESYSITKEQLILREGTITHYIPRITVDTETIRETLNY" FT CDS 6814..7914 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:F8QWL8" FT /protein_id="AEH95576.1" FT /translation="MSSPIILDQAGIIQNQEQNQISTVNNQNQMSRIEDQNQSEEIRHI FT NQIFDIIQSNETNDYYGVDVQLERSKLKQIAKEGKLTLKSGQGIKSEGFLPSITRKNIL FT YLGKFTSEQPLEISTAVGQEALSLVNGKQIADRIAKMKQSDKEKIQYIHLSTIQILVKS FT TYASIDTPMDIIVIDNRIISKNKKEQVLGIIKGNLKYGVIKFDVSLHFAIPLVTKNLSQ FT SIGILYKFHRQDLMEKGDYPLSITYSVGYALSNSHHSVDYLDQEIIHIDDLFKNTSTKL FT VTFEKKNENANDIFRAPPVRMIKPREEDISKPTVTDVTDPLRPTTSSSIQLAPPPNLHR FT KPESMQNLERQIQELRRTVTNLNEKI" FT CDS 7911..8222 FT /codon_start=1 FT /product="A" FT /db_xref="UniProtKB/TrEMBL:F8QWL9" FT /protein_id="AEH95577.1" FT /translation="MSYQYRRGPYLKGSTKRCILEDIEPMKEILSTTKKEILEQFPRSE FT ERSKIIGNLQGLIDYLVKRQKREAENPELTIQEKILKRLNSIEEKLEKANSFSSIFDD" XX SQ Sequence 8302 BP; 3604 A; 1266 C; 1282 G; 2150 T; 0 other; tgatatcaga gcttgagcta caaaaagttc aaactcaaaa tatcttaatg gaaattcccg 60 atttatcaca attatcaaat atagtactta ctgataaccc aggaacaaat ccaggaatcc 120 cttataaagg aaaaattata agtataccta agaatctact accagaaaaa actgagtatt 180 cactagctta cgatggatct cacgaacaaa gaatattacc tatgttaaga tttattactg 240 ctatattaaa taatcaaact gaaatattaa gtttcttatc tatcaatcaa ataaagtctg 300 gaacagtatt tacagaaaaa tactttgaag aacaaaagaa taatatatct atacagcttg 360 aacaaaaccg taaaaacata ttccaaaaat tagaagagtt gaaaggatta tacgataaaa 420 aacaagatac tattatacaa cactctaaca ggataataaa tcttataaca gaaatagagc 480 ataaaaagga cttagacgaa ataaaaaata ctctcaaaga aataaagaaa gatttaattg 540 acaacaataa ccaaaaagaa gttaaagagt taattgaaag tttaaaagat ataagtgatc 600 gaatataatg acagaaggaa acggtaatgg aaaattaacc gaaaaaatag aaaatatgat 660 attaaaatat gaagaattag aaaaagtagt aaaacaagta agtcaagaga tacatgaaat 720 aaaagaacaa gtagaagtcg aaaacgacat aaaagacttc aatgaatcaa aatattataa 780 taatacaatt agaggtaacg ctaaacctac taaagaaatg attattgata ataaccagaa 840 accatgttat caaaccgatt caccttttcc acatctatat cacacctttg atccacaatt 900 aaataatata acagatatgc ttatgtatat aataaaaaat tgctgttgta aaaacaagca 960 tgaacaaaaa gaaaaacaac ctataataca tcctaaaata ttagatgaaa aagatagaca 1020 gataaaagat ttggaagaac acataagaga actagaggaa caccgatgta taaccatttt 1080 agatttaaag aaatattttg gaaataaggt taatgaaaga gaagataaaa agccaataga 1140 atatattgaa gatcaatcaa gacccagtta tagaggaaga aaaccattat ggccacaaat 1200 aatttgatgg aaacaatgaa gccagaaatg atagatcaac aaatcgaaga gattagaaat 1260 attatgaaca atcttaaaat agaaaaaact gaagaaaatg aaataatatt tggaaatgaa 1320 tcagaaaata gtgattatga tgtaagaatg gatgatgtaa aacaagaacc aggaactagt 1380 aatttcgaag aaagatggaa aagaaaaaga aattcgaact atgaatacga accatataat 1440 acagacccat ttattaatgc agaagattat ggatataaaa gaggattcta taaaaataga 1500 gaaggtaaat ggaaaaaacc taaggaacca ggtccagtaa caggacgatt agaagatgga 1560 atattaaatc tagattgttt aactaatgga gaagagttat taaaacaatg gacagcaaaa 1620 caatcattat caacacaaat agatgctacc attcgagata tggatgcaga aaactataat 1680 aaatatttaa tatataaaac atcaggagta gtatttaatt acatagtcga tatagacata 1740 cctaatataa gttctatgaa aaatttagaa atattagaag aaatagctac aaaaatctat 1800 caagaattcc taggaggaat gagcacgcaa agagccacag cggcagataa gcatgatcaa 1860 gaaagagtaa aatatatatt acataaaatg aaaatatgtg acatgtgtga attcgaagaa 1920 ttctactgtc agtttataca ttattattat atgttagaat catcagaacg aagtgcatat 1980 atgaatatat ttattcagaa gttaccatac ccattatcaa aaactataaa tgacgaattt 2040 cagaatcaaa agaatgcaaa cttgatacct gatacattag gaggaatagc taaagtaata 2100 agagcatata tattattaca atgtactaaa gaacaagaaa aaatgcaatt aatcaatgta 2160 acaaaatgtt gcccaaaatt cgaatatata ccacacaaat ttggttgttc accaaattct 2220 tctcgaaggg ggagaaggac aactaaaaaa tcaaaatatt caaaatacta taaacaacgc 2280 aaatatcata cctttaaacc atggtataaa aagaaaagat atcgtatgta caaaagaaaa 2340 tatcaaccca aatatagaca aagatattgg aaaaataaaa gtaatcagaa atattgccct 2400 aaaggaaaaa aagaatgcaa gtgttggatc tgtcaagaag atggacacta tgcaaatgaa 2460 tgcccaaaca aagataaaag aagagataaa gtaaaattat tagaacaatt atcacaagtg 2520 aatctcgaac ctatagaaaa cgatatatta tcagaagaag aactatggta tttacaaact 2580 gatgaagagt cagaagaaga aagtagttca aatgaatcag aacaatactt ttatcaaaat 2640 aacgatcagt cagaagacga tattagcata tattgacaca ggtgcatcat tgtgcctatt 2700 accagaatat aatctaccaa aattattatg gaaagaatta aagaaaccta ttactataag 2760 agttgctgat aaaagagaat tacaaatcac gaaagtagca ctcatgatta ccatactaat 2820 agaaaaaagg aaattccttg tacctactat atatcaattt gattcaggag tacctatgat 2880 tataggaaat aactttttaa gattatatta cccattttgt caatatctat cttacataac 2940 attaagatgt cccaaaatga ttaatcagaa acaagaagta ataaagatac ccatacatca 3000 cagttcacaa ctaataaaag caaagctgct taacttagta acaaatatag aagaacaatt 3060 attaatggaa caagttaata aaatattaca agaaagattc tcactagact tattaggaga 3120 aaagaataaa aataaagaac taatagaaat aaaattaaaa gacccaaatg ctgaaatatt 3180 tgtaccaaat aatataccct atactcaaag agatatagaa gaattcaaag aagatatgga 3240 agatctaata aataaaggat taattagacc aagtaaaagt ccacatagtg cgccagcgtt 3300 ctatgtagaa aatcattcag aaataaagag agcaaaaaga agaatcgtaa taaattacaa 3360 agctatgaat gaagctacca ttggaacacc taaaacatta ccaagatcag attatataat 3420 gaatagatta aaaggaaaaa tatggttttc aacattagat gtaaaatcag cctactggca 3480 attaagatta acagaagaat ctaaaccact aacagcgttt agctatccac ctcaaaaaca 3540 ttacgaatgg aatgttttac ctatgggatt aaagcaagct ccaggtattt ttcaagaatt 3600 tatgaataga agtttacata atttagaaca tatatgttta gtatatgttg atgatattat 3660 tatattttca gaaaaggata aaaatgatca tttatcaaaa gtattacaag ttttgaaaag 3720 atgtgaggat gaaggaatca tcttatcaca accaaaggca aaaatagcac ataaagaaat 3780 tgatttcttt ggattacata tttcagaagg agaaataata ctacaaccac atattttaga 3840 aaagctagta ttatttcctg atgaaattga gaatcgaaag caattacaaa gatttcttgg 3900 aaatttaaat tatataagtg aaaaaggatt tattaaaaat tttgcaaaat atcgaaaaga 3960 attacaaaaa aaagtatcag aaaaagtgcc atggaaatgg acttcctatg acactactca 4020 agtgcaagca ctcaaggcat tatgccaacg attaccaaaa ttatacaatg caaaagaatc 4080 agacttgctg ataatcgcta ccgatgctag taatggccat tggggagcag ttatgacagc 4140 agtcactcca gtatatatca ataattatgg aatatccatt gaggatttat tcccgaaaga 4200 gcagcataca gcgcaagcat tatcatctca atatcagttc ttcggaacaa aggactttgt 4260 ccaaaaagaa ttacttacta aatatgctag tggaacattc acggataccg aaaaaagata 4320 tcctatccat gaattggaaa cattagcagt attacaaact tttcgaaaat ggaaagtcga 4380 tttattatca aaacccttta ttttaaaaac agattcaaaa tatgttacag gatttttgag 4440 atacaaaata aaagccaatt ataatcaagg acgattgatt agatggcaac ttgaattatc 4500 acaattcagt tatcgaactt tttatataaa aggatcagaa aattatggcc ctgacaccct 4560 aaccagggaa tggaaggagc tataaaaaca ttggagaatc aaatcagcac caaagagcaa 4620 tcattccaag caaagaagca gaagctagca gaactcgaag cagagatcaa caatctcaga 4680 tcaacattag ccatactcag tggagatagt agcaaactat caccatcagc cccagaagaa 4740 aagaaatatt cagttctagc caacattgaa gaagttaaca aacaagttgc agcagccaaa 4800 agcaagaagg aatattatgt catttttaat ggacccatga aagggatcta tgacgaatgg 4860 cataaagcag caccacatat tcaaggacaa tccagcatca ttcacaagaa atatccaaac 4920 attgacgaag caaaaaaggc ccttggagga agctacgcag caatcactaa tgcaccagca 4980 tcgcccaaag attcaaaagt actattggga agatttaaag tcccttcagt accaacaatt 5040 gattcaatcc aaactattga gtcaaaaatg aaagcattaa aggttactca gaagaaatat 5100 aatgattata tggagatcct ctacaactat aaggatcaac ataaattatt acatttctac 5160 cctaagtacc gagatacaat tggatataaa gcaataatct tgcccgaagc atcagcacta 5220 accatttatg aattgttcaa aaatggatta gctgacacta tctatttttc ggactcaaaa 5280 gtattcaatg atttccctga aagaatcaag caaaccatca acaactattt caagaggttc 5340 gccaaggaaa gaccatgtta catcaaatta ttcagtaccc atccgacatt cagcattcaa 5400 ggagaagaag acatgcccag ttactcagta ctacagatcg gaatcagcaa tggagatatg 5460 cctttaatgg acactcacca tatgccaata cctaagcatg aggaattaaa gcagatcaat 5520 ctacaaaatt tcattggagt aattaatcat ttatctaatc tgacagcaaa cattaagatg 5580 ctgtataaat cagatacaat gattatctat tccaaagcaa caaaggagat tgaaccagat 5640 caagaagcag tatttattga atttgaaaag aattttattg aaaataaaat tccaaaaatg 5700 ccgggggaga tgaagaaaga attatgcaat catatgacca aggaagatca tccaggacac 5760 tactgtcaat attgtccatt cattcagcag gatgataata agtcagcatc aagtgaagac 5820 gaaggaaaga tcaccatgga agtggaggaa taaaacgtct tcatccatca ctatcaagat 5880 gtagacatca caatgtaaag ctacggctaa tattagatgg cttagaatct acgccaatgt 5940 aaagtagatt cccttatctt ttattttgta agtttgaagt ccggagttga gttccgtctg 6000 tggaattcct ctatataagg acgccctatc ctatgtttgt agtcagagtg ttttccatat 6060 gtgaataaac gtttatcgtt ttaaaggttt cgccctttca ctctccagtg ttgagttctt 6120 cgcaagaagt tctctgaaga gcacatccta tccctatata ccctatcctt acctatccgg 6180 taattctatc ccaaaaagct tgttgcagaa acaaacttga aggattcaag acaggattcg 6240 tcaaagaaca ggtatatgcc taaattatca ccatcagaac taatttacgt ttgtgtactt 6300 attaatttca tcatatcaat tttgttatta ctattttgtg ttatcatagc atgtcaaatc 6360 aaattacttt gttgaataat tactatctac aatattatat tattggaatt gtaaacgaaa 6420 gaattagatt gatattaatt gatacaggag cagctatgtc ctttataaaa caatcattcg 6480 ttcatcaaga atcattaaca cctatccaac catatacagt aaaaggatat ttagatcatc 6540 atacaatagg agataaatat ttagtagaac attctaccaa tataaatgtc atactaagca 6600 acacctttaa caaaacatta ttacttaaga caactcaaac aaaagcagat gtattaggag 6660 cagaagtatt atttggaatg gattttttag atagctttga atcatattca attacaaaag 6720 aacagctaat actaagagaa ggaactatta cccattatat accaagaatc acggtagaca 6780 cagaaactat tagagaaacg ttgaattact aagatgtcat cacctatcat attagatcaa 6840 gcaggaataa tccaaaatca agaacaaaat caaatatcaa cagtcaataa tcaaaatcag 6900 atgtcaagaa tagaggatca aaatcaatca gaagaaatta gacatatcaa tcaaatcttt 6960 gatattatcc aatcaaatga aacaaatgat tattatggag ttgatgtcca actagaaaga 7020 tctaaactaa aacaaatagc gaaagaagga aaattaacat taaaatcagg ccaaggaata 7080 aaatcagaag gattcttacc atctattact agaaagaata tattatattt aggaaagttc 7140 accagcgagc aaccattaga aattagtaca gcagtaggac aagaagcctt atcattagta 7200 aatggaaagc agatagcaga cagaatagca aaaatgaaac agtcagataa agaaaagatt 7260 cagtatatac acttgagcac aatacagata ttagttaaat ctacctatgc ctcaatagat 7320 acacccatgg atattatagt tattgataat agaataattt ctaaaaataa gaaagaacaa 7380 gttctaggaa taattaaagg aaatctgaaa tatggagtta ttaagtttga cgtaagttta 7440 cacttcgcca taccattagt aactaagaat ttaagtcaat ctataggaat attatacaaa 7500 ttccacagac aagatctgat ggaaaaagga gattatccac ttagtatcac ctactccgta 7560 ggatatgcat taagcaatag tcaccatagt gttgattatc tagatcaaga gattatacat 7620 atagatgacc tatttaaaaa caccagtact aagttagtaa catttgagaa aaagaatgaa 7680 aacgctaacg atatatttag agcaccacca gtaagaatga tcaaacctag agaagaggat 7740 atatcaaaac caacagtaac agatgtcact gacccattac gaccaactac cagtagttct 7800 atccaactag cacctccacc taacctacat agaaaaccag aaagtatgca gaacctagaa 7860 aggcagatac aagagctaag aaggacagtt acaaacctca atgaaaaaat atgagttatc 7920 aatatagaag aggaccatat ctaaaaggaa gcactaagag atgtatacta gaagatatag 7980 aacctatgaa ggaaatatta agcactacta agaaagaaat tttagaacaa ttccctagat 8040 ctgaagaaag atcaaaaata ataggaaatt tacaaggatt aattgattat ctagttaaaa 8100 gacaaaaacg agaagcagaa aatccggaat taaccattca agaaaagata ttaaagagat 8160 tgaacagcat tgaagaaaaa ttagagaagg ctaattcatt ttcatcaata ttcgatgatt 8220 agaagaaact tctcatcaga caaatcaggt taatattccg cctgccagtg aaaactagtt 8280 agttgaccac cccgatccgt tt 8302 //