ID HM143914; SV 1; circular; genomic DNA; STD; VRL; 2746 BP. XX AC HM143914; XX DT 02-AUG-2010 (Rel. 105, Created) DT 02-AUG-2010 (Rel. 105, Last updated, Version 1) XX DE Papaya leaf curl virus segment DNA A, complete sequence. XX KW . XX OS Papaya leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2746 RA Raj S.K., Snehi S.K.; RT "Papaya leaf curl virus isolate associated with leaf curl and yellow vein RT symptoms of Nicotiana glutinosa in India"; RL Unpublished. XX RN [2] RP 1-2746 RA Raj S.K., Snehi S.K.; RT ; RL Submitted (23-APR-2010) to the INSDC. RL Plant Molecular Virology Lab, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U.P. 226001, India XX DR MD5; 2fb281e67a32405270cabc1045ee2b1f. XX FH Key Location/Qualifiers FH FT source 1..2746 FT /organism="Papaya leaf curl virus" FT /segment="DNA A" FT /host="Nicotiana glutinosa" FT /mol_type="genomic DNA" FT /country="India:Lucknow (U.P.)" FT /collected_by="Jai Narayan Singh and S. K. Snehi" FT /collection_date="08-Mar-2010" FT /identified_by="S. K. Raj" FT /clone="SKS-Ng" FT /db_xref="taxon:53260" FT gene 150..506 FT /gene="AV2" FT CDS 150..506 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:E2FHG7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E2FHG7" FT /protein_id="ADK73347.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYGEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene 310..1080 FT /gene="AV1" FT CDS 310..1080 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation and virus transmission" FT /db_xref="GOA:E2FHG8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E2FHG8" FT /protein_id="ADK73348.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVPN" FT gene complement(1076..1481) FT /gene="AC3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="AC3" FT /product="replicase enhancer protein (REn)" FT /note="increases viral replication." FT /db_xref="GOA:E2FHG9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E2FHG9" FT /protein_id="ADK73349.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFTMKEDI FT IKVQIQFNHNLRKVLGIHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKFLDNLGVNSINN FT VIRSVDHVLWDVLQHIVYVEQSYSIKFNIY" FT gene complement(1222..1626) FT /gene="AC2" FT CDS complement(1222..1626) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="TrAP; transcriptional activator for virus sense FT genes" FT /db_xref="GOA:E2FHH0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E2FHH0" FT /protein_id="ADK73350.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKRNRRRRVDLTCGCSYFIALA FT CHNYGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPSIHNERRHNQSPNTVQSQP FT EESVGDTQMFSSLPNLDDFTASDWSFLKGF" FT gene complement(1529..2614) FT /gene="AC1" FT CDS complement(1529..2614) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /note="Rep; involved in viral DNA replication" FT /db_xref="GOA:E2FHH1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E2FHH1" FT /protein_id="ADK73351.1" FT /translation="MPRLNSFCVNAKNIFLTYPKCPIPKEQMLEILHSINCPSDKLFIR FT VAQEKHQDVSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEVYVSPFLSSSFNQVPEELEEWAVENVMGDAARTLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWNNIIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALKNWALKNAIFVTLEGPL FT YSGSNQSAAQASQEEEQTSSC" FT gene complement(2200..2457) FT /gene="AC4" FT CDS complement(2200..2457) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /note="involved in silencing supression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E2FHH2" FT /protein_id="ADK73352.1" FT /translation="MCLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2746 BP; 768 A; 537 C; 612 G; 829 T; 0 other; taatattacc ggatggccgc gaattctttt gtgggccctc aacgcaataa ctgacaagga 60 catgcaaacc aatcacatga cgcgctcaaa gcttaattgt tttgtggtcc cctatttaaa 120 cttcggcacc aagtattgta ttttgcacta tgtgggatcc attgttaaac gagtttcctg 180 aaaccgttca cggttttaga tgtatgttag cagttaaata tctacagtta gtagaaaaga 240 cctattctcc cgacacatta ggttacgatt taattaggga tttaatttca gttattaggg 300 ctagaaatta tggcgaagcg accagcagat ataatcattt ccactcccgc ttcgaaggta 360 cgtcgccgtc tcaacttcga cagcccatat gtgagccgtg ctgctgcccc cattgtccgc 420 gtcaccaaag caaaagcatg ggcgaacagg cccatgaaca gaaagcccag gatgtacagg 480 atgtacagaa gtccagatgt ccctagagga tgtgaaggcc catgtaaggt ccagtcgttc 540 gagtccagac acgatgtagt ccatataggt aaggtcatgt gtatcagtga tgtcactcgt 600 ggtactgggc tgacccatcg agttggtaag cgtttttgtg ttaagtctgt ttacgttttg 660 gggaagatct ggatggatga gaacatcaag accaagaatc acacgaacag tgtcatgttc 720 tttcttgttc gtgaccgacg tcctgtagat aagccacaag actttggaga ggtatttaat 780 atgtttgaca acgagcccag cactgctact gtgaagaata tgcacagaga tcgttatcag 840 gtgttgagga agtggcatgc aactgtcacc ggtggacaat acgcgtcaaa ggaacaggca 900 ttagtgaaga agtttgttag ggttaataat tatgttgtat ataaccagca agaggctggg 960 aaatatgaga atcatactga gaatgcattg atgttgtata tggcatgtac tcatgcctct 1020 aacccagtgt atgctacgtt gaagatacgg atttattttt atgattcggt accaaattaa 1080 taaatattaa attttattga atatgattgt tctacatata caatgtgttg taatacatcc 1140 cataaaacat gatcaactga tctgattaca ttattaatac tgttaactcc taaattatct 1200 aaaaacttta aaacttgggt cttaaaaacc cttaagaaac gaccagtctg aggctgtgaa 1260 gtcatccaga ttcggtagac tagaaaacat ttgtgtatcc ccaacacttt cctcaggttg 1320 tgattgaact gtatttggac tttgattatg tcttctttca ttgtgaatgg acggttgtgg 1380 tgttctgtta tcttgaaata caggggattt tgaatctccc agataaacac gccattctct 1440 gcttgagctg cagtgatgag ttcccctgtg cgtgaatcca taattgtgac aggctagtgc 1500 tatgaaatat gaacatccac aagtgagatc aacacgacga cgtctgttcc tcttcttggc 1560 tagcctgtgc tgcactttga ttggaacctg agtagagtgg gccttcgagg gtgacgaaga 1620 tcgcattctt taaagcccaa tttttcagtg cgttattttt ctcttcgtcc aagaactctt 1680 tatagcttga gttgggtcct ggattgcaga ggaagatagt gggtattccg cctttaattt 1740 gaactggctt tccgtacttt gtatttgatt gccagtccct ttgggccccc atgaattctt 1800 taaagtgctt taggtagtgg gggtcgacgt catcaatgat gttgttccag gcatcattac 1860 tgtagacctt tgggctaagg tctagatgac cacacaaata attatgtgga cccaaagacc 1920 tagcccacat cgtctttcct gttctactat caccctctat gacaatactc atgggtctca 1980 aggtccgcgc agcgtcaccc attacattct caacagccca ttcttcaagt tcttcaggaa 2040 cttgattaaa agaagacgat aaaaaaggag aaacataaac ctctacagga ggtgtaaaaa 2100 tcctatctaa attacatttt aaattatgat attgaaaaat aaaatcttta gggagttttt 2160 ccctaattat tgctaaagct gcgtcagctg aacctgcatt tagggcctct gctgctgcat 2220 cattagctgt ctgttgacct cctcgagcag atcttccatc gatctgaaac tgaccccagt 2280 cgatgtaatc actgtccttc tcgatgtagg acttgacatc agagctggac ttagctccct 2340 ggaagtttgg gtggaattgg gtggagttat tagggtgagt gacatcgaaa tgtctggggt 2400 ttctgaactt ggatttacct ttgaactgga tgagggcatg gatatgcaga gacacatctt 2460 ggtgtttttc ttgtgccact ctgataaata atttatcaga tgggcaattt attgagtgaa 2520 gaatctcgag catttgctct ttgggtattg ggcattttgg ataagtgagg aagatatttt 2580 ttgcattaac acaaaaagag ttaagacgag gcatattgaa ttggggacac tcaaaactct 2640 gaggaatggg ggactctggg gacgcattaa tatggtgtcc ccaaatggcc ttttcgtaat 2700 tttgaaagaa aattcaaaat ttaaaatccc aaagcggcca tccgta 2746 //