ID HM140371; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC HM140371; XX DT 19-NOV-2010 (Rel. 106, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Chilli leaf curl virus-Noida [India:Uttar Pradesh:Papaya:2009], complete DE genome. XX KW . XX OS Chilli leaf curl virus-Noida [India:Uttar Pradesh:Papaya:2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2762 RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.; RT ; RL Submitted (21-APR-2010) to the INSDC. RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India XX DR MD5; f8bfe723b0d6f7f013cf923731ec529c. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Chilli leaf curl virus-Noida [India:Uttar FT Pradesh:Papaya:2009]" FT /segment="DNA-A" FT /host="Carica papaya" FT /isolate="Noida" FT /mol_type="genomic DNA" FT /country="India:Uttar Pradesh" FT /isolation_source="leaf" FT /collection_date="Sep-2009" FT /db_xref="taxon:913599" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:E5F1N5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5F1N5" FT /protein_id="ADQ13232.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /note="coat protein; encapsidation/insect transmission" FT /db_xref="GOA:E5F1N6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5F1N6" FT /protein_id="ADQ13233.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYAILKIRIYFYDSVSN" FT gene complement(1073..1477) FT /gene="AC3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:E5F1N7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5F1N7" FT /protein_id="ADQ13234.1" FT /translation="MDSRTGGPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRSHDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1218..1622) FT /gene="AC2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /note="transcription activator protein" FT /db_xref="GOA:E5F1N8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5F1N8" FT /protein_id="ADQ13235.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMLSNLPNLDDLTASDWSFLKGI" FT gene complement(1525..2610) FT /gene="AC1" FT CDS complement(1525..2610) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein" FT /db_xref="GOA:E5F1N9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5F1N9" FT /protein_id="ADQ13236.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYV FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGEPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLAGPL FT YSGSNQSAAQAGQEGDQASSG" FT gene complement(2160..2459) FT /gene="AC4" FT CDS complement(2160..2459) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5F1P0" FT /protein_id="ADQ13237.1" FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK FT ALQMSRPMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQDPKLRPSIY" XX SQ Sequence 2762 BP; 742 A; 569 C; 647 G; 804 T; 0 other; accggatggc cgcgattttt tttccgtggg ccccaccacg cacgtgctga caaagacatg 60 tgcaccaatt aaaatcgtcc ctcatagctt aattatttca tggtcccccc tataaacttg 120 ggctccaagc agtgcactct taccaatgtg ggatccatta gtaaacgagt ttcctgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagctactag aaaatacata 240 ttctccagac actctggggt acgatttaat cagggatttg atctccgtta ttagggctaa 300 gaattatgtc caagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccttatgcca gccgtgctgc tgcccccact gtccgcgtca 420 caaaggccag agcatgggtg aacaggccca tgaacaggaa gcccaggatg tacaggatgt 480 acagaagccc agatgttcct aggggttgtg aaggcccatg taaggtccag tcttttgagt 540 ctagacacga tgtagttcat atagggaagg ttatgtgtat tagtgatgtt acccgtggta 600 ctggattaac ccatagagta ggtaagcgtt tctgtgttaa gtctgtgtac gtattaggga 660 agatatggat ggatgagaat ataaagacta agaatcacac gaatagtgtg atgtttttcc 720 ttgtccgtga tcgtcgtcct gttgataaac cacaagattt tggagaggtg ttcaacatgt 780 ttgacaacga gcctagcact gccactgtga agaatatgca tagagatcgt tatcaggttt 840 tgaggaaatg gcacgcaacg gttactggtg gacagtacgc gtcgaaggaa caggcattag 900 ttaagaagtt cgttagggtt aataattatg ttgtgtataa ccagcaggaa gctggtaaat 960 atgagaatca tacggagaat gcattgatgt tgtacatggc gtgtactcac gcctctaacc 1020 ccgtgtatgc gattttgaag atacggatct acttttatga ttcagtatcg aattaataaa 1080 gattgaattt tattatattt gaactttgta catgaattgt ttgcgctaat acattccata 1140 atacatggtt gacagctcta agtacattgt ttatactaat tacagcaaaa ttatttaaat 1200 acttatacac ttgggtccta aataccctta agaaatgacc agtctgaggc tgtaaggtcg 1260 tccagattcg gaaggttaga aagcatttgt gtatccccaa cgctttcctc aggttgtgat 1320 tgaaccgtat ctgcacggtg atgatgtcgt ggctcctcag gaatggccgg ttgtggtgct 1380 ctgttatctt gaaatacagg ggatttgtta tctcccagat aaacacggaa ttctctgctt 1440 gagctgcagt gatgggtccc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg 1500 aaatatgaac aaccgcagtc taggtcaacc cgacgacgcc tggtcccctt cttggccagc 1560 ctgtgctgca ctttgattgg aacctgagta gagtgggcct gcgagggtga tgaaggtcgc 1620 attctttaaa gcccaatttt tgagtgcgct atttttctct tcatccaaga actctttata 1680 gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggctctccg tatttagtgt ttgattgcca gtccctttgg gcccccatga attctttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccaggcgt cattactgta 1860 gacctttggg ctaaggtcga gatgtccaca caaatagttg tgtggaccta atgacctggc 1920 ccacatagtc ttccccgttc tactatcgcc ctctatcact atactcatgg gcctcaacgg 1980 ccgcgcagcg gcaccgagaa cattctcggc agcccattct tcaagttcct ccggaacttg 2040 atcgaaagaa gaagaacaaa aaggagaaac ataaacctcc aagggaggtg taaaaatcct 2100 atctaaatta gcatttaaat tatgaaattg taaaacataa tctttgggag ctttctccct 2160 taatatattg agggccgcag ctttggatcc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagactgc tgacctcctc tagctgatct tccatcgact tggaaaactc caaaatcaat 2280 gaagtctccg tttttttcca cataggcctt gacatctgaa gagcttttag ctccctgaat 2340 gttcggatgg aaatgtgctg acctggttgg ggaaacgagg tcgaagaatc tgttgttttg 2400 gcatttgaat ttaccttcga attgtatgag gacgtggaga tgaggttccc cattttcatg 2460 taattcgcga caaaccctga tgaacaattt attagtgggg gtgcttaggt tttgaagttg 2520 ggaaagtgct tcttctttag tgagggaaca ctgtggatat gttaagaaat aatttttagc 2580 atatatttga aaacgttttg gaggagccat gttgacttgg tcaatcggta ctcaacaaac 2640 ttggctatgc aatcggtgaa tggtactcaa tatatagtgt gagtaccaaa tggcatgttc 2700 gtaattttga aagcaaattc aaaattcaaa ttccgacaaa agcggccatc cgcactaata 2760 tt 2762 //