ID HM140370; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HM140370; XX DT 19-NOV-2010 (Rel. 106, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Chilli leaf curl virus-Najafgarh2 [India:New Delhi:Papaya:2009], complete DE genome. XX KW . XX OS Chilli leaf curl virus-Najafgarh2 [India:New Delhi:Papaya:2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2763 RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.; RT ; RL Submitted (21-APR-2010) to the INSDC. RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India XX DR MD5; fef74091936d1a45a4e5a03a85e017b2. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Chilli leaf curl virus-Najafgarh2 [India:New FT Delhi:Papaya:2009]" FT /segment="DNA-A" FT /host="Carica papaya" FT /isolate="Najafgarh-2" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="leaf" FT /collection_date="Sep-2009" FT /db_xref="taxon:913598" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:E5F1M9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5F1M9" FT /protein_id="ADQ13226.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDILGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /note="coat protein; encapsidation/insect transmission" FT /db_xref="GOA:E5F1N0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5F1N0" FT /protein_id="ADQ13227.1" FT /translation="MSKRPADIIISTPASKVRRLLNFDSPYASRAAVPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1074..1478) FT /gene="AC3" FT CDS complement(1074..1478) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:E5F1N1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5F1N1" FT /protein_id="ADQ13228.1" FT /translation="MDSRIGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVQNSNIIKFNLY" FT gene complement(1219..1623) FT /gene="AC2" FT CDS complement(1219..1623) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /note="transcription activator protein" FT /db_xref="GOA:E5F1N2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5F1N2" FT /protein_id="ADQ13229.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPIFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1526..2611) FT /gene="AC1" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein" FT /db_xref="GOA:E5F1N3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5F1N3" FT /protein_id="ADQ13230.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQYH FT NLSANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVVPHYLKHFKEFMGAHRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGTNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASSG" FT gene complement(2161..2460) FT /gene="AC4" FT CDS complement(2161..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5F1N4" FT /protein_id="ADQ13231.1" FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRPMWKKTETSLILEFSKSMEDQLEVVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2763 BP; 739 A; 564 C; 645 G; 815 T; 0 other; accggatggc cgcgattttt tttaccgtgg gccccaccac gcacgtgctg acatagacat 60 gtgcaccaat taaattcgtc cctcatagct taattatttc atggtccccc ctataaactt 120 gggctccaag tagtgcactc ttaccaatgt gggatccatt agtaaacgag tttcctgaaa 180 ccgttcacgg ttttaggtgt atgttagcag ttaaatatct gcagctacta gaaaatacat 240 attctccaga cattctgggg tacgatttaa tcagggattt gatctccgtt attagggcta 300 agaattatgt ccaagcgacc agcagatata atcatttcca cgcccgcctc gaaggtacgc 360 cgccttctca acttcgacag cccttatgcc agccgtgctg ctgtccccac tgtccgcgtc 420 acaaaggcca gagcatgggt gaacaggccc atgaacagga agcccaggat gtacaggatg 480 tacagaagcc cagatgttcc tagggggtgt gaaggcccat gtaaggtcca gtcttttgag 540 tctagacacg atgtagttca tatagggaag gttatgtgta ttagtgatgt tacccgtggt 600 actgggttaa cccatagagt aggtaagcgt ttctgtgtta agtctgtgta cgtattaggg 660 aagatatgga tggatgagaa tatcaaaact aagaatcata ctaatagtgt gatgtttttc 720 cttgtccgtg atcgtcgtcc tgttgataaa ccacaagatt ttggagaggt gttcaacatg 780 tttgacaacg agcctagcac tgccactgtg aagaatatgc atagagatcg ttatcaggtt 840 ttgaggaaat ggcacgcaac ggttactggt ggacagtacg cgtcgaagga acaggcatta 900 gttaagaagt tcgttagggt taataattat gttgtgtata accagcaaga agctggtaaa 960 tatgagaatc atactgagaa tgcattgatg ttgtacatgg cgtgtactca cgcctctaac 1020 ccagtgtatg ccactttgaa gatacggatc tacttctatg attcagtatc gaattaataa 1080 agattgaatt ttattatatt tgaattttgt acatgaattg tttgtgctaa tacattccat 1140 aatacatggt tgacagctct gagtacattg tttatactaa ttacagcaaa attatttaaa 1200 tactgcaaca cttgggtcct aaataccctt aagaaatgac cagtctgagg ctgtaaggtc 1260 gtccagattc ggaaggttag aaaacatttg tgtatcccca acgctttcct caggttgtga 1320 ttgaaccgta tctgcacggt gatgatgtcg tggttcctca ggaatggccg gttgtggtgc 1380 tctgttatct tgaaatatag gggatttgtt atctcccaga taaacacgga attctctgct 1440 tgagctgcag tgatgggttc ccctatgcgt gaatccatag ccgtggcagc gtaatgcgat 1500 gaaatatgaa caaccgcagt ctaggtcaac ccgacgacgc ctggtcccct tcttggctag 1560 cctgtgctgc actttgattg gaacctgagt agagtgggcc ttcgagggtg atgaaggtcg 1620 cattctttaa agcccaattt ttgagtgcgc tatttttctc ttcatccaag aactctttat 1680 agctggaatt ggttcctgga ttacagagga agatagcggg aattccacct ttaatttgaa 1740 ctggctttcc gtatttagtg ttggattgcc agtccctatg ggcccccatg aattccttaa 1800 agtgctttag gtagtggggg acgacgtcat caatgacgtt gtaccaggcg tcattactgt 1860 agacctttgg gctaaggtcg agatgtccac acaaatagtt gtgtggacct agtgacctgg 1920 cccacattgt cttgcccgtt ctactgtcgc cctctatcac tatactcatg ggtctcaatg 1980 gccgcgcagc ggcaccgaga acattctcgg cagcccattc ttcaagttcc tccggaactt 2040 gatcgaaaga agaagaacaa aaaggagaaa cataaacctc caacggaggc gtaaaaatcc 2100 tatctaaatt tgcacttaaa ttatgatatt gtaatacaaa atctttggga gctttctccc 2160 ttaatatatt gagggccgca gctttggacc ctgaattgat tgcctcggca tatgcgtcgt 2220 tggcagactg ctgaccacct ctagctgatc ttccatcgac ttggaaaact ccaaaatcaa 2280 tgaagtctcc gtttttttcc acataggcct tgacatctga cgagctttta gctccctgaa 2340 tgttcggatg gaaatgtgct ggcctggttg gggaaacgag gtcgaagaat ctgttgtttt 2400 ggcatttgaa tttaccttcg aattgtatga ggacgtggag atgaggttcc ccattttcat 2460 gtaattcgcg acaaaccctg atgaataatt tattagtggg ggtgcttagg ttttgaagtt 2520 gggaaagtgc ttcttcttta gtgagggaac actgtggata tgttaagaaa taatttttag 2580 catatatttg aaaacgtttt ggaggagcca tgttgacttg gtcaatcggt actcaacaaa 2640 cttggctatg caatcggtga atggtactca atatatagtg tgagtaccaa atggcatgtt 2700 cgtaattttg aaagcaaatt caaaattcaa attccgacaa aagcggccat ccgcactaat 2760 att 2763 //