ID HM140368; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC HM140368; XX DT 19-NOV-2010 (Rel. 106, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Papaya leaf crumple virus-Nirulas [India:New Delhi:Papaya:2007], complete DE genome. XX KW . XX OS Papaya leaf crumple virus-Nirulas [India:New Delhi:Papaya:2007] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2736 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2736 RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.; RT ; RL Submitted (21-APR-2010) to the INSDC. RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India XX DR MD5; eb3580755ea26979eb10ee4545dddc1d. DR EuropePMC; PMC5142593. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Papaya leaf crumple virus-Nirulas [India:New FT Delhi:Papaya:2007]" FT /segment="DNA-A" FT /host="Carica papaya" FT /isolate="Nirulas [IN:ND:Pap:07]" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="leaf" FT /collection_date="Dec-2008" FT /db_xref="taxon:913601" FT gene 120..485 FT /gene="AV2" FT CDS 120..485 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:E5F1L5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5F1L5" FT /protein_id="ADQ13212.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYHHFNARLEGTPPSQLRQPICESCCCPHCPRHKGKGLDQQAHEP FT KAQDVQDVQKPRCSEGL" FT gene complement(258..548) FT /gene="AC5" FT CDS complement(258..548) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:E5F1L6" FT /db_xref="UniProtKB/TrEMBL:E5F1L6" FT /protein_id="ADQ13218.1" FT /translation="MTLPMCWISCLDSNDWTLHGPSQPLGTSGLLYILYILGFRFMGLL FT VQALAFVTRTMGAAARLAYGLSKLRRRRTFEAGVEMMISAGRFDIIPSPNN" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /note="coat protein; encapsidation/insect transmission" FT /db_xref="GOA:E5F1L7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5F1L7" FT /protein_id="ADQ13213.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYSYDSVSN" FT gene complement(1047..1451) FT /gene="AC3" FT CDS complement(1047..1451) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:E5F1L8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5F1L8" FT /protein_id="ADQ13214.1" FT /translation="MDSRTGESITAAQAMNGVYIWETPNPLYFKILNHDQRPLNMNHDI FT INIRVQFNHNLRKRLGIMKCFLGLRIHTRLHPQTWHFLRVFKTQVLRYLDSLGVISINN FT CIKAFRHVVYDVLEGTINVIEDHDIKFNIY" FT gene complement(1192..1599) FT /gene="AC2" FT CDS complement(1192..1599) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /note="transcription activator protein" FT /db_xref="GOA:E5F1L9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5F1L9" FT /protein_id="ADQ13215.1" FT /translation="MQHSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCSYYVHI FT NCHNHGFTHRGIHHCSSSNEWRVYLGNPKSPLFQDPQPRPKATQHEPRHHQHQGPVQSQ FT PQEETGDNEVFLGLEDPHSFTSSDLAFLKSL" FT gene complement(1523..2587) FT /gene="AC1" FT CDS complement(1523..2587) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein" FT /db_xref="GOA:E5F1M0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5F1M0" FT /protein_id="ADQ13216.1" FT /translation="MAPPKQFQIYAKNYFLTYPKCSLTKEEALSQLQNLQTPVNKKYIK FT ICRELHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDTLDWGEFQIDGRSARGGQQSANDAYAQAINTGSKSEALRVIKELAPKDYVLQFH FT NLNANLDRIFAPPMEVYVSPFLSSSFDQVPEAIEEWASDNVMGPAARPLRPKSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSLKIYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALRSWAIHNATFITLTEPL FT YSGTHQGPTQASQA" FT gene complement(2128..2436) FT /gene="AC4" FT CDS complement(2128..2436) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5F1M1" FT /protein_id="ADQ13217.1" FT /translation="MKMGNLIFTCSSSSRANTSAKITDFSTSYPQPGQHISIRTFRELN FT RAQMSSPIWRRTETPSIGESFRSTDDLHGGDNSQPMMLTPKPLTQAVSQRLLESLRN" XX SQ Sequence 2736 BP; 714 A; 561 C; 656 G; 805 T; 0 other; accggatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cctatttagt gcggggggac caataaatag acttgctcac caagtttgta ttgacaaaca 120 tgtgggaccc actattgaat gagtttccag aaactgttca tgggtttagg tgcatgctag 180 cagtgaaata cctgcagcta gtagaaaata cgtattcccc agacactctg ggatacgatc 240 taattaggga tttaatttca gttattaggg ctcggaatta tgtcgaagcg accagcagat 300 atcatcattt caacgcccgc ctcgaaggta cgccgccgtc tcaacttcga cagcccatat 360 gcgagtcgtg ctgctgcccc cattgtccgc gtcacaaagg caagggcctg gaccaacagg 420 cccatgaacc gaaagcccag gatgtacagg atgtacagaa gcccagatgt tccgaggggc 480 tgtgaaggcc catgtaaggt ccagtcattt gagtccagac atgatatcca gcacattggt 540 aaagtcatgt gtgttagtga tgttactcgt ggtattgggc tgacccacag ggttggcaag 600 aggttctgtg tgaagtccgt ttatgttttg ggcaagatct ggatggatga gaacatcaag 660 actaagaatc atacgaatag tgttatgttt ttccttgtta gggatcgtag gcccgttgat 720 aagcctcaag attttggtga ggtttttaac atgtttgata atgagcccag cacggcgact 780 gtgaagaatg ttcatcgtga taggtaccag gttcttagga agtggcatgc aacagttaca 840 ggtggtctgt atgcatcgaa ggagcaggct ctcgtgaaga agtttattag ggttaataat 900 tatgttgtgt ataaccagca agaggctggc aagtacgaga atcatactga gaatgcattg 960 atgttgtata tggcgtgtac ccacgcctct aacccagtgt atgccacttt gaagatacgg 1020 atctactctt atgattcagt atcgaattaa taaatattga attttatatc atgatcctca 1080 attacattaa ttgtgccctc aagtacatca tatactacat gtctgaaagc cttaatacaa 1140 ttatttatac taattacgcc taaactatct aaatatctta aaacttgagt cttaaagact 1200 cttaagaaat gccaagtctg aggatgtaaa cgagtgtgga tcctcaagcc caagaaacac 1260 ttcattatcc ccagtctctt cctgaggttg tgattgaact ggaccctgat gttgatgatg 1320 tcgtggttca tgttgagtgg cctttggtcg tggttgagga tcttgaaata gaggggattt 1380 ggggtttccc agatatacac gccattcatt gcttgagctg cagtgatgga ttcccctgtg 1440 cgtgaatcca tggttgtggc agttgatgtg tacgtagtat gagcacccac actcgaggtc 1500 aaccctcttg cgccggatgg ctctacgctt ggctagcctg tgttggacct tgatgggtac 1560 ctgagtacag tggctctgtg agggtgatga atgttgcatt atgtatagcc cacgacctta 1620 gtgctgagtt cttttcctca tcgaggtact ctttatagct ggaattgggc ccaggattgc 1680 agaggaagat agtgggtatc cctcctttaa tttgaactgg tttcccgtac ttggtgttac 1740 tttgccagtc cctctgggcc cccatgaact ctttaaagtg ctttaggtag tgggggtcta 1800 cgtcatcaat gatgttgtac catgcatcat ttgaatatat cttgagactc agatctaaat 1860 ggccacacag ataattgtgt ggtcccaaag acctggccca cattgtcttg cccgtacgac 1920 tatcaccctc aatgacgata cttttaggtc tcaatggccg cgcagcggga cccatcacat 1980 tatcagaggc ccattcctct atggcctctg gaacttgatc gaaggaagaa gaaagaaaag 2040 gggaaacata aacctccatt ggaggtgcaa aaatcctatc taaattagca ttaagattat 2100 gaaattgtaa cacataatcc tttggtgcta attccttaat gactctaaga gcctctgact 2160 tactgcctgt gttaatggct tgggcgtaag catcattggc tgactgttgt cccccccgtg 2220 cagatcgtcc gtcgatctga aactctcccc aatcgagggt gtctccgtcc ttctccatat 2280 aggacttgac atctgagctc gatttagctc cctgaatgtt cggatggaaa tgtgctgacc 2340 tggttgggga tacgaggtcg aaaaatctgt tatttttgca cttgtatttg ccctcgaact 2400 ggatgagcac gtgaagatga ggttccccat tttcatgaag ctctctgcag atttttatgt 2460 attttttgtt tactggggtt tgtagatttt gtaattggga aagtgcctcc tctttagtaa 2520 gagagcattt gggataagtg aggaagtaat ttttggcata tatttgaaat tgtttgggag 2580 gagccattga cttggtcaat cggtacccag cactagtcct atggcaattg gtgaacggta 2640 ccctatatat agtgggtacc aaatggcaga attgtaattt ggaaaagaaa attactttaa 2700 ttcaaattcc cataaagcgg ccatccgtat aatatt 2736 //