ID HM140366; SV 1; circular; genomic DNA; STD; VRL; 2761 BP. XX AC HM140366; XX DT 19-NOV-2010 (Rel. 106, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Chilli leaf curl virus-Panipat1 [India:Panipat:Papaya:2008], complete DE genome. XX KW . XX OS Chilli leaf curl virus-Panipat1 [India:Panipat:Papaya:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2761 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2761 RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.; RT ; RL Submitted (21-APR-2010) to the INSDC. RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India XX DR MD5; 3648304f1fa181b301002ddfc35ccb0a. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Chilli leaf curl virus-Panipat1 FT [India:Panipat:Papaya:2008]" FT /segment="DNA-A" FT /host="Carica papaya" FT /isolate="Panipat-1" FT /mol_type="genomic DNA" FT /country="India:Haryana" FT /isolation_source="leaf" FT /collection_date="Apr-2008" FT /db_xref="taxon:913597" FT gene 145..510 FT /gene="AV2" FT CDS 145..510 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:E5F1K2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5F1K2" FT /protein_id="ADQ13199.1" FT /translation="MRDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQ FT EAQDVQDVQKPRRSEGL" FT gene 305..1075 FT /gene="AV1" FT CDS 305..1075 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /note="coat protein; encapsidation/insect transmission" FT /db_xref="GOA:E5F1K3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5F1K3" FT /protein_id="ADQ13200.1" FT /translation="MSKRPADIIISTPASKVRRLLNFDSPYTSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKDTDLFYDSVSN" FT gene complement(1072..1476) FT /gene="AC3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:E5F1K4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5F1K4" FT /protein_id="ADQ13201.1" FT /translation="MDSRTGEPITATQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1217..1621) FT /gene="AC2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /note="transcription activator protein" FT /db_xref="GOA:E5F1K5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5F1K5" FT /protein_id="ADQ13202.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCNSSREFRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1524..2609) FT /gene="AC1" FT CDS complement(1524..2609) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein" FT /db_xref="GOA:E5F1K6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5F1K6" FT /protein_id="ADQ13203.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEQALSQLQNLSTPTNKLFIR FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKDGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKASALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLTGPL FT YSGSNQSAAQAGQEGDQASSG" FT gene complement(2159..2458) FT /gene="AC4" FT CDS complement(2159..2458) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5F1K7" FT /protein_id="ADQ13204.1" FT /translation="MKMGNLICTSSYNSKVNSNARTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIF" XX SQ Sequence 2761 BP; 758 A; 566 C; 644 G; 793 T; 0 other; accggatggc cgcgattttt tcttgtgggc cccacaacac acgtgctgac aaggacaagt 60 gaaccaatta caaacgcccc tcaaagctta attattcaat ggtcccctat ataaacttgg 120 tccccaagta gtgcacacat accaatgcgg gatccattag taaacgagtt tcctgaaacc 180 gttcacggtt ttaggtgtat gttagccgtt aaatatctgc agctagtaga aaagacttat 240 tctccagaca ccctcgggta cgatttaatc cgggatttaa tttcggttat tagggctaga 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccttctcaac ttcgacagcc catataccag ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaaa gcatgggcca acaggcccat gaacaggaag cccaggatgt acaggatgta 480 cagaagccca gacgttccga ggggctgtga aggcccgtgt aaggtccagt cgtttgagtc 540 caggcatgat atccagcaca ttggtaaagt catgtgtgtt agtgatgtta ctcgtggtac 600 tggtctgacc cacagagtag gtaagcgttt ctgtgttaag tctgtgtatg tattagggaa 660 gatatggatg gatgagaata taaagactaa gaatcacacg aatagtgtga tgtttttcct 720 tgtccgtgat cgtcgtcctg ttgataaacc acaagatttt ggagaggtgt tcaacatgtt 780 tgacaacgag cctagcactg ccactgtgaa gaatatgcat agagatcgtt atcaggtttt 840 gaggaaatgg cacgcaacgg ttactggtgg acagtacgcg tcgaaggaac aggcattagt 900 taagaagttc gttagggtta ataattatgt tgtgtataac cagcaggaag ctggtaaata 960 tgagaatcat actgagaatg cattgatgtt gtacatggcg tgtactcacg cctctaatcc 1020 tgtgtatgct accttaaaag atacggatct attttatgat tcagtatcga attaataaag 1080 attgaatttt attatatttg aactctgtac atgaattgtt tgtgctaata cattccataa 1140 tacatggttg acagctctaa gtacattgtt tatactaatt acagcaaaat tatttaaata 1200 cttatacact tgggtcctaa atacccttaa gaaatgacca gtctgaggct gtaaggtcgt 1260 ccagattcgg aaggttagaa aacatttgtg tatccccaac gctttcctca ggttgtgatt 1320 gaaccgtatc tgcacggtga tgatgtcgtg gttcctcagg aatggccggt tgtggtgctc 1380 tgttatcttg aaatacaggg gatttgttat ctcccagata aacacggaat tctctgcttg 1440 agttgcagtg atgggttccc ctgtgcgtga atccatagcc gtggcagcgt aatgcgatga 1500 aatatgaaca accgcagtca aggtcaaccc gacgacgcct ggtccccttc ttggccagcc 1560 tgtgctgcac tttgattgga acctgagtag agtgggcctg tgagggtgat gaaggtcgca 1620 ttcttcaaag cccaattttt gagtgcgcta tttttctctt catccaagaa ctctttatag 1680 ctggaattgg gtcctggatt gcagaggaag atagcgggaa tgccaccttt aatttgaact 1740 ggctttccgt atttagtgtt tgattgccag tccctttggg cccccatgaa ttctttaaag 1800 tgctttaggt agtggggatc aacgtcatca atgacgttgt accaggcgtc attactgtag 1860 acctttgggc taaggtcgag atgtccacac aaatagttgt gtggacctaa tgacctggcc 1920 cacatagtct tccccgtcct actatcaccc tctatgacaa tacttatggg tcttaacggc 1980 cgcgcagcgg caccgagaac attctcggca gcccattcct caagttcctc gggaacttga 2040 tcaaaagaag aagaacaaaa aggagaaaca taaacctcca agggaggtgt aaaaatccta 2100 tctaaattag catttaaatt atgaaattgt aaaacataat ctttgggagc tttctccctt 2160 aaaatattga gggccgaagc tttggaccct gaattgattg cctcggcata tgcgtcgttg 2220 gcagactgct gacctcctct agctgatctt ccatcgacct ggaaaactcc aaaatcaatg 2280 aagtctccgt ctttctccac ataggccttg acatctgacg agcttttagc tccctgaatg 2340 ttcggatgga aatgtgctgg cctggttggg gaaacgaggt cgaagaatct gttgttctgg 2400 catttgaatt taccttcgaa ttgtatgagg acgtgcagat gaggttcccc attttcatgt 2460 aattctcgag aaaccctgat gaataattta ttagtggggg tgcttaggtt ttgaagttgg 2520 gaaagtgctt gttctttagt gagggaacac tgtggatatg ttaagaaata atttttagca 2580 tatatttgaa aacgttttgg aggagccatt ttgacttggt caatcggtac tcaacaaact 2640 tggctatgca atcggtgaat ggtactcaat atatagtgtg agtaccaaat ggcgtatggg 2700 taattttgaa agaaaattca aaattcaaat tccgacaaaa gcggccatcc gcaataatat 2760 t 2761 //