ID HM140365; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HM140365; XX DT 19-NOV-2010 (Rel. 106, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Chilli leaf curl virus-HD [India:New Delhi:Papaya:2007], complete genome. XX KW . XX OS Chilli leaf curl virus-HD [India:New Delhi:Papaya:2007] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2763 RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.; RT ; RL Submitted (21-APR-2010) to the INSDC. RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India XX DR MD5; c674d0fc9fcd86d8f6ae5a4737030bce. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Chilli leaf curl virus-HD [India:New FT Delhi:Papaya:2007]" FT /segment="DNA-A" FT /host="Carica papaya" FT /isolate="HD" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="leaf" FT /collection_date="Jun-2007" FT /db_xref="taxon:913596" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:E5F1J6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5F1J6" FT /protein_id="ADQ13193.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYAPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /note="coat protein; encapsidation/insect transmission" FT /db_xref="GOA:E5F1J7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5F1J7" FT /protein_id="ADQ13194.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1074..1478) FT /gene="AC3" FT CDS complement(1074..1478) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:E5F1J8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5F1J8" FT /protein_id="ADQ13195.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNQDI FT ITVQIQFNHNLRKALGIHKCFLTYRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVHSSNIIKFNLY" FT gene complement(1219..1623) FT /gene="AC2" FT CDS complement(1219..1623) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /note="transcription activator protein" FT /db_xref="GOA:E5F1J9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5F1J9" FT /protein_id="ADQ13196.1" FT /translation="MRPSSPSKAHSTQLPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRPDTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1526..2611) FT /gene="AC1" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein" FT /db_xref="GOA:E5F1K0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5F1K0" FT /protein_id="ADQ13197.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH FT NLSANLDRIFTPPLEVYVSPFCSSSFDQVPEELEDWAAENVLGAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSASNQSAAQAGQEGDQASSS" FT gene complement(2161..2460) FT /gene="AC4" FT CDS complement(2161..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5F1K1" FT /protein_id="ADQ13198.1" FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIQTFRELK FT ARQMSRPMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2763 BP; 734 A; 568 C; 653 G; 808 T; 0 other; accggatggc cgcgattttt ttcaccgtgg gccccaccac gcacgtgctg acaaagatat 60 gtgcaccaat taaaatcgtc cctcatagct taattatttc atggtccccc ctataaactt 120 gggctccaag tagtgcactc ttaccaatgt gggatccatt agtaaacgag tttcctgaaa 180 ccgttcacgg ttttaggtgt atgttagcag ttaaatatct gcagctacta gaaaatacat 240 atgctccaga cactctgggg tacgatttaa tcagggattt gatctccgtt attagggcta 300 agaattatgt ccaagcgacc agcagatata atcatttcca cgcccgcctc gaaggtacgc 360 cgccgtctca acttcgacag cccttatgcc agccgtgctg ctgcccccac tgtccgcgtc 420 acaaaggcca gagcatgggt gaacaggccc atgaacagga agcccaggat gtacaggatg 480 tacagaagcc cagatgttcc taggggttgt gaaggcccat gtaaggtcca gtcttttgag 540 tctagacacg atgtagttca tatagggaag gttatgtgta ttagtgatgt tacccgtggt 600 actgggttaa cccatagagt aggtaagcgt ttctgtgtta agtctgtgta cgtattaggg 660 aagatatgga tggatgagaa tatcaagact aagaatcaca cgaatagtgt gatgtttttc 720 cttgtccgtg atcgtcgtcc tgttgataaa ccacaagatt ttggagaggt gttcaacatg 780 tttgacaacg agcctagcac tgccactgtg aagaatatgc atagagatcg ttatcaggtt 840 ttgaggaaat ggcacgcaac ggttactggt ggacagtacg cgtcgaagga acaggcatta 900 gttaagaagt tcgttagggt taataattat gttgtgtata accagcagga agctggtaaa 960 tatgagaatc atactgagaa tgcattgatg ttgtacatgg cgtgtacgca tgcctctaac 1020 cccgtgtatg ccactttgaa gatacggatc tacttctatg attcagtatc gaattaataa 1080 agattgaatt ttattatatt tgaactgtgt acatgaattg tttgtgctaa tacattccat 1140 aatacatggt tgacagctct aagtacattg tttatactaa ttacagcaaa attatttaaa 1200 tacttataca cttgtgtcct aaataccctt aagaaatgac cagtctgagg ctgtaaggtc 1260 gtccagattc ggtaggttag aaaacatttg tgtatcccca acgctttcct caggttgtga 1320 ttgaactgta tctggacggt gatgatgtct tggttcctca ggaatggccg gttgtggtgc 1380 tcggttatct tgaaatacag gggatttgtt atctcccaaa taaacacgcc attctctgcc 1440 tgagctgcag tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgcgat 1500 gaaatatgaa cagccgcagt ctaggtcaac tcgacgacgc ctggtccccc tcttggccag 1560 cctgtgctgc actttgattg gaagctgagt agagtgggcc ttcgagggtg atgaaggtcg 1620 cattctttaa agcccaattt ttgagtgcgc tatttttctc ttcatccaag aactctttat 1680 agctggaatt gggtcctgga ttgcagagga agatagcggg aattccacct ttaatttgaa 1740 ctggctttcc gtattttgtg ttggattgcc agtccctttg ggcccccatg aattccttaa 1800 agtgctttag gtagtgggga tcgacgtcat caatgacgtt gtaccaggcg tcattactgt 1860 agacctttgg gctaaggtcg agatgtccac acaaatagtt gtgtggacct agtgacctgg 1920 cccacattgt cttgcccgtt ctactatcgc cctctatcac aatacttatg ggtctcaatg 1980 gccgcgcagc ggcaccgaga acattctcgg cagcccagtc ttcgagttcc tccggaactt 2040 gatcgaaaga agaagaacaa aaaggagaaa cataaacctc caacggaggc gtaaaaatcc 2100 tatctaaatt agcacttaaa ttatgaaatt gtaatacaaa atctttggga gctttctccc 2160 ttaatatatt gagggccgca gctttggacc ctgaattgat tgcctcggca tatgcgtcgt 2220 tggcagactg ctgacctcct ctagctgatc ttccatcgac ttggaaaact ccaaaatcaa 2280 tgaagtctcc gtttttttcc acataggcct tgacatctga cgagctttta gctccctgaa 2340 tgtttggatg gaaatgtgct ggcctggttg gggaaacgag gtcgaagaat ctgttgtttt 2400 ggcatttgaa tttaccttcg aattgtatga ggacgtggag atgaggttcc ccattttcat 2460 gtaattcgcg acaaaccctg atgaacaatt tattagtggg ggtgcttagg ttttgaagtt 2520 gggaaagtgc ttcttcttta gtgagggaac actgtggata tgttaagaaa taatttttag 2580 catatatttg aaaacgtttt ggaggagcca tgttgacttg gtcaatcggt actcaacaaa 2640 cttggctatg caatcggtga atggtactca atatatagtg tgagtaccaa atggcatgtt 2700 cgtaattttg aaggcaaatt caaaattcaa attccgacaa aagcggccat ccgcactaat 2760 att 2763 //