ID HM140364; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC HM140364; XX DT 19-NOV-2010 (Rel. 106, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Chilli leaf curl virus-DU [India:New Delhi:Papaya:2009], complete genome. XX KW . XX OS Chilli leaf curl virus-DU [India:New Delhi:Papaya:2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2763 RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.; RT ; RL Submitted (21-APR-2010) to the INSDC. RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India XX DR MD5; 7eb2dfb05a7b5ad00e77e21badca9da6. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Chilli leaf curl virus-DU [India:New FT Delhi:Papaya:2009]" FT /segment="DNA-A" FT /host="Carica papaya" FT /isolate="DU" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="leaf" FT /collection_date="Sep-2009" FT /db_xref="taxon:913595" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:E5F1J0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5F1J0" FT /protein_id="ADQ13187.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTLGYDLIRDL FT ISVIRVKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /note="coat protein; encapsidation/insect transmission" FT /db_xref="GOA:E5F1J1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5F1J1" FT /protein_id="ADQ13188.1" FT /translation="MSKRPADIIISTPASKVRRLLNFDSPYASRAAVPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVSGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1074..1478) FT /gene="AC3" FT CDS complement(1074..1478) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:E5F1J2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5F1J2" FT /protein_id="ADQ13189.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFGVISINN FT VLRAVNHVLWFVLAQTIHVQSSNIIKFNLY" FT gene complement(1219..1623) FT /gene="AC2" FT CDS complement(1219..1623) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /note="transcription activator protein" FT /db_xref="GOA:E5F1J3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5F1J3" FT /protein_id="ADQ13190.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFSVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1526..2611) FT /gene="AC1" FT CDS complement(1526..2611) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein" FT /db_xref="GOA:E5F1J4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5F1J4" FT /protein_id="ADQ13191.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKATKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDQASSG" FT gene complement(2161..2460) FT /gene="AC4" FT CDS complement(2161..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5F1J5" FT /protein_id="ADQ13192.1" FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRHMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2763 BP; 743 A; 569 C; 639 G; 812 T; 0 other; accggatggc cgcgattttt ttttccgtgg gccccacaac gcacgtgctg acaaagacat 60 gtgcaccaat taaaatcgtc cctcatagct taattatttc atggtccccc ctataaactt 120 gggctccaag tagtgcactc ctaccaatgt gggatccatt agtaaacgag tttcctgaaa 180 ccgttcacgg ttttaggtgt atgttagcag ttaaatatct gcagctacta gaaaatacat 240 attctccaga cactctgggg tacgatttaa tcagggattt gatctccgtt attagggtta 300 agaattatgt ccaagcgacc agcagatata atcatttcca cgcccgcctc gaaggtacgc 360 cgccttctca acttcgacag cccttatgcc agccgtgctg ctgtccccac tgtccgcgtc 420 acaaaggcca gagcatgggt gaacaggccc atgaacagga agcccaggat gtacaggatg 480 tacagaagcc cagatgttcc taggggttgt gaaggcccat gtaaggtcca gtcttttgag 540 tctagacacg atgtagttca tatagggaag gttatgtgta ttagtgatgt tacccgtggt 600 actgggttaa cccatagagt aggtaagcgt ttctgtgtta agtctgtgta tgtatcaggg 660 aagatatgga tggatgagaa tatcaagact aagaatcaca cgaatagtgt gatgtttttc 720 cttgtccgtg atcgtcgtcc tgttgataaa ccacaagatt ttggagaggt gttcaacatg 780 tttgacaacg agcctagcac tgccactgtg aagaatatgc atagagatcg ttatcaggtt 840 ttgaggaagt ggcacgcaac ggttaccggt ggacagtacg cgtcgaagga acaggcatta 900 gttaagaagt tcgttagggt taataattat gttgtgtata accagcaaga agctggtaaa 960 tatgagaatc acactgagaa tgcattgatg ttgtacatgg cgtgtactca cgcctctaat 1020 cccgtgtatg ctaccttaaa gatacggatc tatttctatg attccgtttc aaattaataa 1080 agattgaatt ttattatatt tgaactttgt acatgaattg tttgtgctaa tacaaaccat 1140 aatacatggt tgacagctct aagtacattg tttatactaa ttacaccaaa attatttaaa 1200 tacttataca cttgggtcct aaataccctt aagaaatgac cagtctgagg ctgtaaggtc 1260 gtccagattc ggaaggttag aaaacatttg tgtatcccca acgctttcct caggttgtga 1320 ttgaaccgta tctgcacggt gatgatgtcg tggttcctca ggaatggccg gttgtggtgc 1380 tctgttatct tgaaatacag gggatttgtt atctcccaga taaacactga attctctgct 1440 tgagctgcag tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgcgat 1500 gaaatatgaa caaccgcagt ctaagtcaac ccgacgacgc ctggtcccct tcttggccag 1560 cctgtgctgc actttgattg gaacctgagt agagtgggcc ttcgagggtg atgaaggtcg 1620 cattctttaa agcccaattt ttgagtgcgc tatttttctc ttcatccaag aactctttat 1680 agctggaatt gggtcctgga ttgcagagga agatagcggg aattccacct ttaatttgaa 1740 ctggctttcc gtatttagtg tttgattgcc agtccctttg ggcccccatg aattccttaa 1800 agtgctttag gtagtggggg tcgacgtcat caatgacgtt gtaccaggcg tcattactgt 1860 agacctttgg gctaaggtcg agatgtccac acaaatagtt gtgtggacct aatgacctgg 1920 cccacatagt cttccccgtc ctactatcac cctctatgac aatacttatg ggtcttaacg 1980 gccgcgcagc ggcaccgaga acattctcgg cagcccattc ctcaagttcc tcgggaactt 2040 gatcaaaaga agaagaacaa aaaggagaaa cataaacctc caagggaggt gtaaaaatcc 2100 tatctaaatt tgcatttaaa ttatgaaatt gtaaaacata atccttggta gctttctccc 2160 ttaatatatt gagggccgca gctttggacc ctgaattgat tgcctcggca tatgcgtcgt 2220 tggcagactg ctgacctcct ctagctgatc ttccatcgac ttggaaaact ccaaaatcaa 2280 tgaagtctcc gtttttttcc acatatgcct tgacatctga cgagctttta gctccctgaa 2340 tgttcggatg gaaatgtgct ggcctggttg gggaaacgag gtcgaagaat ctgttgtttt 2400 ggcatttgaa tttaccttcg aattgtatga ggacgtggag atgaggttcc ccattttcat 2460 gtaattcgcg acaaaccctg atgaacaatt tattagtggg ggtgcttagg ttttgaagtt 2520 gggaaagtgc ttcttcttta gtgagggaac actgtggata tgttaagaaa taatttttag 2580 catatatttg aaaacgtttt ggaggagcca tgttggcttg gtcaatcggt actcaacaaa 2640 cttggctatg caatcggtga atggtactca atatatagtg tgagtaccaa atggcatgtt 2700 cgtaattttg aaagcaaatt caaaattcaa attccgacaa aagcggccat ccgcactaat 2760 att 2763 //