ID HM125562; SV 1; linear; genomic RNA; STD; VRL; 3820 BP. XX AC HM125562; XX DT 01-MAY-2011 (Rel. 108, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Rice ragged stunt virus isolate SX segment 4, complete sequence. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-3820 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT "Phylogenetic evidence for origin and evolution of rice rigged stunt RT virus"; RL Unpublished. XX RN [2] RP 1-3820 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT ; RL Submitted (15-APR-2010) to the INSDC. RL Institute of Plant Virology, Fujian Agricultural and Forestry University, RL Fuzhou, Fujian 350002, P.R. China XX DR MD5; be63d4542a3603dbc087ae45abc9000d. DR EuropePMC; PMC5549333; 28789694. XX CC GenBank Accession Numbers HM125559-HM125568 represent sequences CC from the 10 segments of Rice ragged stunt virus. XX FH Key Location/Qualifiers FH FT source 1..3820 FT /organism="Rice ragged stunt virus" FT /segment="4" FT /host="rice" FT /isolate="SX" FT /mol_type="genomic RNA" FT /country="China:Shaxian, Fujian province" FT /collection_date="2006" FT /db_xref="taxon:42475" FT CDS 12..3776 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RRSVs4gp1; P4" FT /db_xref="GOA:F4YTU9" FT /db_xref="InterPro:IPR007097" FT /db_xref="UniProtKB/TrEMBL:F4YTU9" FT /protein_id="AEC32904.1" FT /translation="MTLLVITEQTIHSLCLDHGETNQIIAEIKQLEKPELLFSYITDAE FT PLATGEVFVGPDICGNCITHTFRVPDYVAKPPPYDSKRVYYPYSYTCLGFDSHPYDYLL FT TLDTKSIFQAIRKITLARKLSIATQSDLDLIILKKLTTQSNCQSRVSSIWRQCVAACLA FT FEPQIQNNNSTQSPNLNNLVKRMFATLLKPIGRLPFYERRRNFVWEEEVSCPTILPLLL FT YSIQNLVTQFCAGVINRMEMILAFQYYLDCGVTAYQDEKLRLQKLIRNWLREGLAKFSK FT IAMPNWTVSGVISCTTVKPIMITTHEAREIKSAREAREASVPTYLLQYINHAIHKAISP FT YQTHQYWQATRVFANDGTYFASVAALTLNKAVRPRIEETTVKYPNSRYLTMNKEHIAVT FT LPNETDTNFGLACQFVKQFIPRLVTRLKNTNFQEEFIAFLTSSSSGKDFEDAAIATMTR FT TIQRVAKKRIVAAGLESRSYLNQQFIADECLAAAKLVGRTQIGRRQRAIAGVNNTRSLL FT GFPPMLMLKALLDMTGTTSSGKQMGNYLDLLIPLGLSPYANVIFNSADVDAMDASVQAS FT VQQIMWHFVVYIALQLERTDYFAFTSGDEVIYELVEGKDSVATSIHMSGLARSCLRAMH FT LLQPQNCVLNDDIVGELVTREPTFPSGQPFTTVHHTFTLSNAIMGGTLRVTNLTNQPST FT LLNLTVQGDDTRTINYGPKGCIEKCIDDQSSFVSDWGFKVSNETSSHTSEYLQQRVSCG FT TFVGYPDRVSLFAAERPKEGKTMKEKMSEIWSLVTDLGCRSRDPQRLVRLMYAIGVACC FT CRLTIRDREVAEEFIASEVGRACCAEILVPKVAARADRGVMLRYHYPISALWLEEGGQL FT PPLATKRRDGTWTCFPSYYFQRGDSNRYWYWDVSLTEEKWITTVEMRSDWDSNNAIELI FT DDEILEAYATRYALAALGLNKTRQMERLRLSEESTIFDVEQLASGLNAYRNLSKIAISH FT RASERLKNAGVELPDSVLYSRHTQSRIQDAILKAQMTEKEEIEMSLYFFKDKGYLRSLR FT ELVKSKSGDLAMIHRCEWGERVTILESSIFDVVSTTPLSMEVYPGSIMSFILCYTGLKG FT AHSGQLAGLVGLLQGKYGGGKISELQFSIAKKIYLTKPYLLNEFIIACGLGGEAELALK FT NALHAFEMLRGVEFSTVHTPRQFFFGVDSGVTLGNHLDYPNGFPGTRIELAAHLLLAMN FT FLSSNAQSCTGRSIRVRVPRGMWSRCTNF" XX SQ Sequence 3820 BP; 1084 A; 788 C; 927 G; 1021 T; 0 other; gataaatctc catgactcta ttagtgatca ccgagcagac catacattca ctgtgtctcg 60 accacggaga aactaaccag attatcgcgg agattaaaca acttgagaag ccagaactct 120 tattttcata tatcacggac gccgaacctt tagcaaccgg agaagtattt gtaggaccag 180 acatctgcgg caattgtata acccatactt tcagagttcc cgactacgtc gcgaaacccc 240 ctccttatga ttcgaagcgc gtgtattatc cgtactctta tacttgtttg ggcttcgata 300 gtcaccctta cgattatttg cttactttag atactaagtc aatattccaa gcaattcgga 360 aaattactct agcgcgtaag ctatcaattg ccacacagtc cgatctggat ctaattattt 420 taaagaagtt gactacacaa tcaaattgcc aatcgcgcgt gtctagtatt tggcgtcagt 480 gtgtagcagc atgcctagcg ttcgagcctc agatccaaaa caacaactct acccaatcgc 540 cgaacttgaa caacttagtc aagaggatgt tcgcaacatt gctaaaaccc atcggtcgcc 600 tacccttcta cgaacgcaga cgaaattttg tgtgggaaga agaggtgagt tgtcctacga 660 tactaccctt gctcctttac agtattcaga acctggtgac tcaattttgc gcgggagtga 720 taaacaggat ggaaatgatt ctagcctttc aatattatct agactgtggt gttacggcgt 780 atcaagacga aaagctcagg cttcagaaat tgattcggaa ttggttgcgc gagggattag 840 caaagttctc gaagatagcc atgccaaatt ggacggtttc gggagtcatc agctgtacga 900 cagtcaaacc tataatgatt actactcacg aagcgcggga aatcaaatca gcgagagagg 960 cgagggaggc gagcgttcca acttatttat tgcagtacat aaaccacgcc atccacaaag 1020 ctatcagccc gtatcagacc catcagtatt ggcaggctac gagagtgttc gcgaacgacg 1080 ggacgtattt cgcttcggtg gcggcactaa ctttgaacaa ggcggttcga ccgagaatag 1140 aggaaactac agtgaaatac ccgaactcac gttatttaac tatgaacaag gaacacatag 1200 cggtcacgct accgaacgag acggatacaa attttggtct ggcatgtcaa tttgtgaaac 1260 aatttatacc gcgactcgtg acgagattga agaatacgaa ctttcaagag gaattcatag 1320 cgttcctgac atcatcgagc tcaggcaaag acttcgaaga cgcagccatc gcaactatga 1380 cgcgaaccat tcaacgggtg gcgaagaaga gaatagtggc agcaggtcta gaatcgcgga 1440 gttatctcaa ccaacaattc atcgccgatg agtgcttagc cgccgcaaaa ttagtgggtc 1500 gcacccagat tggaaggaga cagagagcta ttgctggtgt caataatact cgttcactgt 1560 taggattccc tcctatgtta atgttaaaag cgttgctgga tatgacagga actacctcat 1620 ccgggaaaca gatgggtaat tatttagatt tgttaattcc tctcggatta tcaccatacg 1680 ctaatgtgat tttcaattcg gcggatgtgg atgcaatgga tgctagtgtg caggcctcag 1740 ttcagcaaat aatgtggcat tttgttgtgt acatagcttt acaattggaa cgtacagatt 1800 attttgcttt tacctcggga gatgaagtga tatatgagct agttgaagga aaggattcag 1860 ttgctaccag tattcatatg agtggtcttg caagatcttg tttacgcgca atgcatttac 1920 ttcagccaca gaattgtgta ttgaacgatg acatcgtcgg ggagttagtc actcgtgagc 1980 ccacctttcc ttctggtcag ccgtttacga cagtccatca cacctttaca ttgtcaaatg 2040 ctatcatggg tggtactttg agagtgacca atctcaccaa tcagccgtcg acactactta 2100 atctaacggt gcaaggggat gatacaagaa ccatcaacta tggacctaag ggttgcatcg 2160 aaaagtgcat tgatgatcaa tcgtctttcg tgagtgattg gggctttaaa gtctcgaacg 2220 agacgtcatc tcacacttcg gaatatttac aacagcgtgt ttcatgtggt acctttgtcg 2280 gataccctga tcgagtttca ttatttgcag cagaacggcc aaaagaaggc aagacgatga 2340 aagagaagat gtcagaaatt tggagtttgg ttacggattt gggttgtcgc tctagagatc 2400 cgcagcgatt ggttcgattg atgtatgcta ttggagtagc gtgctgttgt cgattaacta 2460 taagggacag agaggtagca gaagagttca tcgcatcaga ggttggtcga gcatgctgtg 2520 ctgagatttt agtgccaaaa gttgcagcaa gggcggatag aggtgtaatg ttgcggtacc 2580 actaccctat cagtgctctt tggttagaag aaggaggcca gctaccacct ttagcgacta 2640 aaagaaggga cggcacttgg acgtgttttc ccagttacta cttccaacgc ggcgactcta 2700 accgatattg gtattgggat gttagtctca ctgaagagaa gtggataact acagtggaga 2760 tgcgctccga ctgggactcg aataatgcta tcgagctgat agacgatgag attcttgaag 2820 cgtatgccac tagatatgct ctggccgcgt tggggctcaa taaaacccgt cagatggaaa 2880 ggttgcgatt gagcgaagaa tcaactatat tcgatgttga gcagctagcc tctgggctga 2940 acgcttatcg taatcttagt aaaatagcga tatcacatag agcctctgag cggttaaaga 3000 atgccggagt agagttgcct gatagcgtgt tgtatagtcg ccatacccaa tccaggatac 3060 aagatgcaat actcaaggcg caaatgacag aaaaggaaga aattgagatg tcattgtact 3120 tctttaaaga caaaggttat cttagatcac ttcgtgaatt agtgaagtct aaatcaggcg 3180 atttggctat gatacatagg tgcgaatggg gtgagcgagt tactattctt gaatcttcaa 3240 tattcgacgt agtttcgacc actccattat caatggaagt gtacccgggt tcgataatgt 3300 ccttcatttt atgttatacc ggactcaaag gtgctcatag tggacaattg gctggtttag 3360 taggtttgtt acaaggtaaa tacggcgggg ggaagattag cgaacttcag ttttcgatag 3420 caaagaaaat ctatctaact aaaccatatt tgttaaacga atttatcata gcttgcggtc 3480 tcggcggcga agcggaatta gcccttaaaa acgctcttca tgcattcgaa atgttacgag 3540 gcgttgagtt ttcaacggta cacaccccaa ggcagttttt ctttggtgtt gattcgggag 3600 ttacgcttgg taatcatctt gactacccaa acggattccc aggaacgaga attgagttag 3660 cggcacacct gttattagcg atgaatttct taagttctaa cgctcagtcc tgtaccggta 3720 ggtctattcg tgtacgagta ccaaggggga tgtggtcgcg gtgtacgaac ttctaagagc 3780 ccggggttga acgcccggtg tggggagata gagaaggtgc 3820 //