ID HM125550; SV 1; linear; genomic RNA; STD; VRL; 3808 BP. XX AC HM125550; XX DT 01-MAY-2011 (Rel. 108, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Rice ragged stunt virus isolate GD segment 2, complete sequence. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-3808 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT "Phylogenetic evidence for origin and evolution of rice rigged stunt RT virus"; RL Unpublished. XX RN [2] RP 1-3808 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT ; RL Submitted (15-APR-2010) to the INSDC. RL Institute of Plant Virology, Fujian Agricultural and Forestry University, RL Fuzhou, Fujian 350002, P.R. China XX DR MD5; 6a9991a45cf976e0e172ebf132fb476f. XX CC GenBank Accession Numbers HM125549-HM125558 represent sequences CC from the 10 segments of Rice ragged stunt virus. XX FH Key Location/Qualifiers FH FT source 1..3808 FT /organism="Rice ragged stunt virus" FT /segment="2" FT /host="rice" FT /isolate="GD" FT /mol_type="genomic RNA" FT /country="China:Xinyi, Guangdong province" FT /collection_date="2007" FT /db_xref="taxon:42475" FT CDS 169..3747 FT /codon_start=1 FT /product="structural protein" FT /note="RRSVs2gp1; P2" FT /db_xref="UniProtKB/TrEMBL:F4YTT7" FT /protein_id="AEC32892.1" FT /translation="MTEYTNLPVKWTNGIVISDERMMLDPLPSEVSAVLDAPINYSYRY FT NELRRTHSLKLFGVWSGYIPSHADKHLMIFQLLQQEKELTGDEIRLALRQMQGSIKLPI FT NDKLLDSLDRYSLIFAWIAYAGCLDSAFWQQVCADPKCLVYNPDDNLKFSLMFSLARQY FT SATTRICSADGLRIPSQISPDLGQLAFDLVFNSSVRQTVWFHANDFPAFDFYTKDVGTM FT VTFHVNFLYNMTHCVPFKTKQSCAEYLIQKAHEAWSVYCGVLNDTIRHRLRLVEGVGIV FT TLDVDLQILAAVGWYLPLLVYTIRSVSGSDISEWLNVARRGVQDLNCSSMINGEGYVGV FT PEQFWTIHATSKARMWPRVKKYTCDLTDLYNGDLSSTVLGEGASETGTVKWFDVPLGPK FT VENFRVVGTRIGALSRANVIYNYEDPSDNCDLARAIGSFVPSLPTSGTRDTNSDLEDAK FT KMFDYRVSQNVYSICQKGKISSLVSRSIKNLRASLMNGELRVCKGSRLWALRAMLFSDK FT LRYKSDGQVIDPYESDRGKIIVRLNNSSLKMLSAFVTLIELAMAQSSGVEDNMLNGRGL FT SPLQVRSDREVSRVVIAGAINEPLVGCLRRMYPKLSVIGFGMDAVGENERLTVEGASQR FT NLACDMLISDIDQTFYSDFTKMCNVTVKHALAFSSWSDYVLMKVNYPSSHLLNEIKQAL FT LSRGFSRIVLPVVMCGQNSFTSEVFVYIGRAGVGGHVDFKNNWFTKNDILMRRYRHMKA FT PLITIPQVVHSVVSKCVTKHDTELFANPGSIVALTVEYASAREVVSLISEVCSPVWTWR FT TGAGANKFVNIVGMPSKARAALTRRTDEHYYLKAFERNIVGTSFGMYKGIPRIDALNCV FT SWVTIFGAAMRECLYWIVDTLKVQYNEVISIGARNMTDIEFIKPSVKLTCYDEYYANPQ FT DLATHYNVNYENKYFNWLSPTLVNDSVYVANFVIMAPTEGSESPSATEQLDRIDSVAGA FT MAKSSITRMTFVGNLYDSRFLADIALSSLPPEGLKVNDTRTTVQIGKYPPCAAVKPSAF FT LERMKKYKGVLSYHVYPLGYDRVLKTCADNLWIPDVAGSPMLAFCQGLSYAFYITKPAI FT PDEGIDQFMLDDMPDDGSGSVTPTQSPSPSPSPSAAANTEASTVVEPIDNSDVVSPTVP FT AQPSQTPVNPNQSTELQSVAKPGIVR" XX SQ Sequence 3808 BP; 1042 A; 754 C; 926 G; 1086 T; 0 other; gataaatctt cccgaagcaa ccacgtttga cgtaacctac tgaagagtcc cccggaagtt 60 tcactcagga gttgagtcct tgaaccccag cattcaatca agagaacata tcatcatcat 120 cattcaaatc gctttcttcg tacttgttgt ttgttggatt ttcttaaaat gacggagtat 180 acaaatttgc cggttaaatg gacgaacggc atagtcattt cagacgaacg tatgatgctc 240 gatcccttac cgtcagaagt ttcagccgta ctggacgcac caatcaacta ttcctatcgg 300 tacaacgaac tgcggcgcac gcatagtctt aaattattcg gtgtttggtc gggctacata 360 ccaagtcatg ctgataagca tttgatgatc ttccaattat tgcagcaaga aaaggaatta 420 acaggtgacg agataagatt ggcgcttagg cagatgcaag gatcaattaa gttacctata 480 aatgacaagc tgcttgattc gttagaccgg tattctctaa tttttgcgtg gatagcatac 540 gcgggatgtc tagactcagc tttttggcaa caagtatgtg cggacccgaa atgtttggtc 600 tataatccag atgacaatct caaattctca ttaatgttta gtctcgcaag acagtacagc 660 gctacgacta ggatttgttc agcagatgga ttgcgcattc cctctcaaat atcgccagat 720 cttggtcaat tggcgttcga tctcgtgttt aatagttccg taaggcagac tgtttggttt 780 cacgccaatg attttcccgc tttcgacttt tatactaagg acgttggaac tatggtcact 840 tttcatgtta atttccttta taacatgacg cattgtgttc cgttcaagac gaagcaatca 900 tgcgctgagt atctgatcca gaaagcacat gaagcgtggt cggtttattg cggagtatta 960 aacgatacga tcagacacag attacgatta gttgagggcg ttggaattgt tacattagac 1020 gttgacttgc aaatattagc tgcggttgga tggtacttac cattactcgt ctatactatc 1080 agaagcgtgt caggttcaga tatcagtgag tggctcaacg tcgcgagacg aggagttcaa 1140 gatcttaact gtagcagtat gatcaatggt gagggttatg ttggtgttcc ggaacagttt 1200 tggacgatcc acgcaacttc aaaagccagg atgtggccaa gggttaagaa atacacctgc 1260 gacttaacag atttatacaa cggcgatctt tcaagcactg tattgggcga aggagctagc 1320 gagactggga cagttaaatg gtttgatgtg cctttaggac ctaaggttga gaatttcaga 1380 gtggttggaa cacgtatagg cgcgttgagc agagctaatg ttatatacaa ttacgaagat 1440 ccttccgata attgtgattt agcgcgagcc attggttcgt ttgttcctag tttgccaact 1500 tctggtacta gagatacgaa tagtgatctt gaagacgcga agaagatgtt tgactatcgg 1560 gtgtcacaaa acgtatatag catttgtcag aaagggaaaa tttcttcgtt ggtatcgcgc 1620 agcatcaaga acttgagagc gagtctgatg aatggcgagc tacgcgtctg taaaggaagc 1680 agactttggg ctctaagagc gatgttgttc tcagataaac tcaggtacaa aagcgatggt 1740 caagtaatcg atccatacga gagcgacaga ggtaaaataa tagttagatt aaacaactct 1800 agcttaaaga tgctgtcagc ttttgtgacg ctaatcgagc tagcgatggc acagtcgtcg 1860 ggcgttgaag ataatatgtt aaatggtcga gggttatccc ctttgcaagt aagatcagat 1920 cgtgaagtaa gtcgagtcgt gatcgctgga gctattaacg agccattagt tgggtgttta 1980 agacgtatgt atccaaagct gtcagtgatt ggattcggta tggatgcagt tggtgagaat 2040 gaacgtttaa ctgtcgaggg cgcctcacaa aggaatttag cgtgtgatat gctaatatcg 2100 gacatcgatc aaacgttcta cagtgatttc actaagatgt gtaatgttac tgtgaagcat 2160 gctcttgctt tctcgagctg gagtgattac gttctgatga aggtgaacta tccatcctcg 2220 catcttttga atgagattaa acaagcccta ctttcgcggg gattttctag aattgtcctt 2280 cctgtagtga tgtgtggtca aaattcattc acgagtgagg tttttgttta cattggacga 2340 gctggtgttg gtgggcatgt tgattttaag aacaactggt tcaccaaaaa cgatatatta 2400 atgcgtagat atcgtcatat gaaagctcca ttaatcacca taccgcaagt tgtgcacagt 2460 gttgtatcaa aatgtgtgac gaagcacgac accgagctgt tcgctaatcc tggaagtatc 2520 gttgccttga ctgtcgagta tgcatccgca cgagaggtag tttccctaat cagtgaggta 2580 tgttcgcctg tatggacatg gcgtactgga gctggcgcga acaagtttgt caatattgtc 2640 ggaatgcctt cgaaagctag ggcagctttg accaggcgaa ccgatgaaca ttattatctt 2700 aaggcatttg agcggaatat agtcggtacg agttttggta tgtacaaagg gatacctcgc 2760 atagatgctc ttaattgcgt gtcatgggtg acgattttcg gagctgcaat gcgtgaatgt 2820 ctttattgga tcgttgatac tctcaaagtg caatataatg aggtgatatc aatcggagct 2880 cgtaacatga cggatattga gttcatcaaa cccagtgtca aattgacatg ctacgacgag 2940 tactacgcta accctcagga tctagcgacg cattataatg tgaattatga aaataagtac 3000 ttcaattggt taagccctac cctcgtcaac gacagtgttt acgtggctaa tttcgtgatt 3060 atggccccta ccgaaggttc cgaatctcct agcgctacgg agcagcttga tagaatagat 3120 tctgttgcag gcgcgatggc aaagtctagt attactagga tgacgttcgt tggtaaccta 3180 tacgattcta ggttcttggc cgatatagct ctttcgtccc tgccacctga gggattaaaa 3240 gttaatgata ctagaacaac tgttcaaatt ggtaaatatc ctccatgtgc cgcggttaag 3300 ccttctgcgt ttctagagcg tatgaagaag tacaaagggg tgttatcata ccatgtgtat 3360 cccttgggtt acgatcgtgt tcttaagact tgcgccgata acttatggat accggatgta 3420 gcaggatcgc ccatgctagc tttctgtcaa ggactatctt acgcgttcta tatcacgaag 3480 ccagctatac ctgatgaagg catagatcaa tttatgttag acgatatgcc cgatgatggt 3540 agtggatctg taactccaac acaatcgcca tctccaagtc cttctcctag tgccgcggct 3600 aacactgagg cttcgactgt cgttgagcct atcgataatt cagatgtagt gagtccgacg 3660 gtaccagcgc aaccatctca gacgcctgtc aatcccaacc aatcaaccga gctccagagc 3720 gttgcgaagc cgggcatcgt taggtaggag tagttcattc gtgagaacct gcggccaaca 3780 ggggaacggg aggagataga gaaagtgc 3808 //