ID   HM125544; SV 1; linear; genomic RNA; STD; VRL; 2158 BP.
XX
AC   HM125544;
XX
DT   01-MAY-2011 (Rel. 108, Created)
DT   01-MAY-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Rice ragged stunt virus isolate CT segment 6, complete sequence.
XX
KW   .
XX
OS   Rice ragged stunt virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus.
XX
RN   [1]
RP   1-2158
RA   Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT   "Phylogenetic evidence for origin and evolution of rice rigged stunt
RT   virus";
RL   Unpublished.
XX
RN   [2]
RP   1-2158
RA   Chen Q., Wu M.A., Wu Z.J., Xie L.H.;
RT   ;
RL   Submitted (15-APR-2010) to the INSDC.
RL   Institute of Plant Virology, Fujian Agricultural and Forestry University,
RL   Fuzhou, Fujian 350002, P.R. China
XX
DR   MD5; ce03eea39e16dca382a0c84b82d129dd.
XX
CC   GenBank Accession Numbers HM125539-HM125548 represent sequences
CC   from the 10 segments of Rice ragged stunt virus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2158
FT                   /organism="Rice ragged stunt virus"
FT                   /segment="6"
FT                   /host="rice"
FT                   /isolate="CT"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Changting, Fujian province"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:42475"
FT   CDS             41..2083
FT                   /codon_start=1
FT                   /product="non-structural protein"
FT                   /note="RRSVs6gp1; Pns6"
FT                   /db_xref="UniProtKB/TrEMBL:F4YTT1"
FT                   /protein_id="AEC32886.1"
FT                   /translation="MQLFIVKLDSRSSASNEILVLDINELRKYVSKHQLSFRGAQVHET
FT                   NSEHSVRNWEDDNITMFFHTSNVFPSEKSVRHALFSRNSVHVCGPLNIGAFRDSLRVLQ
FT                   SPQFPIHTYGDDITVFDKLREFVVVPNSLAVVDMDTSAWERYTYSLFTDEPGTITLADE
FT                   TPPTISPTGRDSVSPVARFSPSISISSIAIGEVGSASKRRQRLVKQAKSSDKTPIPEIR
FT                   LNKKDTAFAETGTEQASPKTEIVAATVHKIPVNHAEADKRVVVLKGRTKDKAQEVREVT
FT                   SLARDTTGVEHELMQSVGDDSVQVSGELSGFGDESFEVSKTDVVGVENKQLAIDRVPEL
FT                   EPCGEVSEDEELVSEGMYAVPLDLDIYAEKCPSPTPPNSPKKREEADHEPIDISSAMMK
FT                   LRLIAAAFQKEMMAYDKIDCLSSDDPAYLLAQFCLRNLNGVFVPEYVEEHSSDEENADD
FT                   PNQGWNGTPVHGSREIFEKLSESRLASMEMISNVKPIRWNSKKTTYAVTIERGNPNLIA
FT                   NAVSDAWANHSQISKRVIRAFGCSTDYCLERLASRDYDAILMLMSSLSGACHATKSYCY
FT                   LQIVAYGSLAAPECEELDSPVASIKCYSAVAHEMHELNRLKESGVAALPDKLMLETYLR
FT                   KLSRHFEDTSAMLETVSTTNAFPFRVVVLLVSMSGIGLVIRPIID"
XX
SQ   Sequence 2158 BP; 588 A; 448 C; 561 G; 561 T; 0 other;
     gataaatcct ctgaaaagga gccaaacctc ttgctttgac atgcagctct tcatagtcaa        60
     acttgacagt cgatcgtcgg cttccaacga aattcttgtt ttagacatca acgaattacg       120
     caaatatgtt tcgaaacatc aactcagctt tcgcggtgct caagtccacg aaaccaattc       180
     ggaacattcg gtgcgtaatt gggaggatga caacattact atgtttttcc acacgtcgaa       240
     cgtttttcct tcagaaaaga gtgttagaca cgccttattt tctagaaact ctgtccatgt       300
     atgcggcccg ctaaatatag gtgcatttcg cgattccttg cgtgtattac agagtcctca       360
     atttccaatc catacttacg gtgacgacat cacggtgttt gataagttga gggaatttgt       420
     agttgtgcct aatagtttag cagttgtaga catggacact tcagcctggg agcgttacac       480
     ctactcgctc ttcacagatg agcccggaac gataactctg gcagacgaaa cgccacctac       540
     tatcagccca acaggacgag attccgttag cccagtagct agattctcac cttcgatttc       600
     aatctcaagc atcgctattg gtgaagttgg ttcggcaagt aaacgtaggc aaagattggt       660
     taagcaggcc aagtcgtctg acaagactcc tattccggag attcgtctaa acaagaagga       720
     tacagcgttt gctgagactg gtactgagca agctagtccc aagaccgaaa tcgtggctgc       780
     cacagttcat aaaattcctg tcaatcatgc cgaggcggat aaacgcgtag tggtcttgaa       840
     gggtcggaca aaagataaag cccaagaggt tagagaggta acgagtttag cgagagatac       900
     aactggtgtg gaacatgagt tgatgcaatc agtcggtgat gatagtgtgc aagtgagcgg       960
     tgaattgagc ggcttcggtg acgagtcctt cgaagtgtcg aaaacggatg ttgtcggagt      1020
     agagaacaag caattggcca ttgatcgagt accagaactt gagccctgtg gggaggtgag      1080
     tgaggacgag gagttagtgt cagagggaat gtacgctgtg ccattagatt tggatattta      1140
     tgctgagaaa tgtcctagcc cgacgccccc caatagtccg aagaagcgtg aggaggcgga      1200
     tcatgagcca atagatattt cctcagcgat gatgaagcta agattgatcg ctgcggcgtt      1260
     ccagaaggag atgatggctt atgataaaat agattgcctc agcagtgatg atccagccta      1320
     cctacttgct caattctgcc ttagaaattt gaatggtgtg ttcgtgcccg agtacgttga      1380
     ggaacacagt agtgatgagg agaatgcgga tgatcctaac caaggctgga atggtacacc      1440
     ggttcacggt agtcgtgaga tctttgagaa attgagcgag tctaggttgg cgtctatgga      1500
     aatgatatca aatgtgaaac cgattcgctg gaacagcaag aagacgactt acgctgtcac      1560
     tattgaacgt ggaaatccaa atttgatcgc taacgcagtc tctgacgcgt gggccaatca      1620
     ttctcaaatt tcgaaaaggg taattcgtgc gttcggctgt tcaactgact actgcttaga      1680
     gcgattagcg tctcgtgatt atgatgctat tcttatgtta atgtcaagcc taagtggagc      1740
     atgccatgct acaaagtcgt attgctacct tcaaattgtc gcttatggga gtctcgccgc      1800
     acctgaatgt gaggagcttg attcaccagt tgcatctatc aagtgttaca gtgccgtcgc      1860
     tcatgaaatg cacgagctca accgtctaaa ggaaagcggg gtcgctgcat tgccagataa      1920
     gttgatgctt gaaacctatc tacgtaagtt gagccgccac tttgaggata cgtcggctat      1980
     gcttgagaca gtgtcaacaa caaacgcctt tccgttccgt gtggttgtgt tattagtgtc      2040
     aatgtctggt ataggtcttg taatacgacc gattatcgac tagagagaat ggcacgagga      2100
     ctgtgtcttg ggtaaggtaa gggctccgag gtgccactag gaggagatgg agaggtgc        2158
//