ID HM107774; SV 1; linear; genomic RNA; STD; VRL; 4046 BP. XX AC HM107774; XX DT 01-MAY-2011 (Rel. 108, Created) DT 16-APR-2015 (Rel. 124, Last updated, Version 2) XX DE Pea streak virus isolate V4 polyprotein gene, partial cds; and TGB1, TGB2, DE TGB3, and capsid protein genes, complete cds. XX KW . XX OS Pea streak virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-4046 RA Beckova M.; RT "Identification and sequencing genome of new virus infecting lucerne"; RL Unpublished. XX RN [2] RP 1-4046 RA Beckova M., Petrzik K.; RT ; RL Submitted (14-APR-2010) to the INSDC. RL Department of Plant Virology, Biology Centre AS CR, v.v.i., Branisovska 31, RL Ceske Budejovice 370 05, Czech Republic XX DR MD5; 689ba7b39ba7ab76e45b93cef4c40ce7. DR EuropePMC; PMC4400424; 25883281. XX FH Key Location/Qualifiers FH FT source 1..4046 FT /organism="Pea streak virus" FT /host="Medicago sativa (lucerne)" FT /isolate="V4" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /collection_date="2008" FT /db_xref="taxon:157777" FT CDS <1..1785 FT /codon_start=1 FT /product="polyprotein" FT /note="putative replicase" FT /db_xref="GOA:F4YRJ6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F4YRJ6" FT /protein_id="AEA48968.1" FT /translation="FGESTGLTFDRGLVIISADSLKVNEKRWVTALSRFRQNVAFLNLT FT GDTLENLVLRKSGTILADFLRGTSKVENLKNILPGNPKFKQTFIGKVGKDQGLVEEKLS FT GDPWLKGELFLGQTEDAEVELINESMEQDQWFKTHLPRCEMEGVRSRWLHLLLEKELRE FT YRFKDMVTEQFTDDHDRGCGERLTNAAGRFEAIYPRHRASDNLTFLMAVKKRLRFSKPH FT IEEAKLNEALPYGKFLLDEFLKKIPMRASHRPDLMAEAVQDFEVKKRSKSAATIENHAG FT RSCRDWLADVGLVFSKSQICTKFDNRFRSAKAAQSIVCFQHSVLCRFAPFMRYIEKLLS FT EALRKTNYYIHSGKRLEDLDEWVVKGNFTGVCTESDYEAFDASQDHWIMAFEITLMEYL FT GLPRDLIADYRYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANALFTFLRYDTRGDEYI FT CFAGDDMCASKHLKVSEKFNDFLSKLKLKAKVQFTKNPTFCGGWSLLPFGIFKKTPLVY FT DRICIARENKNLHNCIDNYAIELSYAYKRGELAVNTMSEEETDAFYNCVRVIIKRSHLL FT KSDVRQVFLNPILMESLH" FT CDS 1816..2550 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:F4YRJ7" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F4YRJ7" FT /protein_id="AEA48969.1" FT /translation="MEVSLNNLLECGFHRNIVAFDLPIIVLAVPGAGKTSCIRRLLRED FT SRFEAWTFGVADHHNCSGRFIRGITEDSKPTGGDFIIVDEFQRGDWKSFKPFAILGDIA FT QLMLKTNVKFSSAFSKCSSHRVPLPVVKLLQEFDFEIAGERAGLLEIKSLLGAEPEGVV FT VCFEREVCDFLDYNQVEHKSPNDIVGLEFPIVSLIISGKDIIGRQGAEFYVCCTRASDK FT LLIITPNPEDFHKGPNAIDSSS" FT CDS 2528..2842 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:F4YRJ8" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:F4YRJ8" FT /protein_id="AEA48970.1" FT /translation="MPLIAPPNNSNSILALAVGAGLALVIYTLRSNQLPNVGDNIHSLP FT HGGLYKDGTKTVQYFSPARVPNNWFKGPNNIQALALVLLIVGLLHLLPARVNRGCNCHK FT " FT CDS 2824..3033 FT /codon_start=1 FT /product="TGB3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:F4YRJ9" FT /protein_id="AEA48971.1" FT /translation="MQLSQVVICISSCIIVLLGLNALESFLNNSSTSCTVILTGESVKI FT VGCEFSLSFIEYAKLCELQRIGDL" FT CDS 3059..3943 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:F4YRK0" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:F4YRK0" FT /protein_id="AEA48972.1" FT /translation="MAEQQKAAEEKARVEAKLKAQLEQQQAKLGSEKEFIKDAEGLQKS FT LLERFQALQDLTAKSIAGTSIVNGGWEADRKRLKVSDKMKLDGSNIFTRPTLDDLQKLG FT WNPEANQVATAENLAKISAKLKELGVPPEQMARTFWDVAMYCTAVGASRYTNPQGSINY FT PEGSITRDAVFGVIREQCTLRQVCRSFAPIIWNYMHVNNMPPTNWAEKGFSNDTKFAAF FT DFFDFVECPASIQPADGLIRRPTSDEYVAFNTHKKCALARADKNGRYASTDASITGGMF FT GCGAKENWRNNAC" XX SQ Sequence 4046 BP; 1170 A; 755 C; 999 G; 1122 T; 0 other; tttggagaga gcactggtct gacttttgat cggggattgg tcatcattag tgcagattcg 60 ctcaaagtta atgagaaaag gtgggtcaca gctttgtcca ggtttagaca aaatgtggct 120 ttcttaaatt tgactggtga caccctagag aatcttgttc ttaggaagtc cggcaccata 180 cttgcagatt tcctgcgggg cacaagcaaa gtggagaatc tcaaaaacat actccctggg 240 aatccaaaat ttaaacaaac tttcattggc aaagttggca aggatcaagg cttagttgag 300 gagaaattga gtggcgatcc ctggttgaaa ggggaacttt tccttggtca gactgaagat 360 gcagaagttg agctcataaa tgaatccatg gagcaggatc agtggttcaa gactcactta 420 ccccggtgtg aaatggaggg agtccgaagc agatggttac atttactcct ggaaaaagag 480 cttcgtgagt accgattcaa ggacatggtc acagaacaat ttacagatga tcatgatcga 540 ggttgtggtg aacgcctaac taatgctgct ggaagatttg aggctatcta tccgcgtcac 600 agggcatccg ataatttgac cttcctgatg gcagtgaaga agaggctgag attctcaaaa 660 ccacatattg aggaggccaa gctgaatgaa gcattgccat atggcaaatt tttgctggat 720 gaattcttga aaaaaatccc aatgagggct agtcacaggc ccgatttgat ggcggaggct 780 gtgcaagatt ttgaggtgaa gaagaggagc aaaagtgcag caactattga aaatcatgcg 840 ggtaggtctt gtagagactg gttggctgat gttgggctgg tgttttcaaa aagtcagatc 900 tgcacaaagt ttgataatag attcagaagt gctaaggctg ctcaatcaat agtctgcttc 960 cagcactctg tgctctgtag atttgcaccc tttatgcgat acattgaaaa attattaagt 1020 gaggcactta ggaaaacaaa ctattacatc cattccggga aaaggttgga agatttggat 1080 gagtgggttg ttaaggggaa ctttacaggg gtatgcactg aatcggacta tgaagctttc 1140 gatgcatcac aagatcactg gatcatggcc ttcgagatta ctctaatgga gtatttggga 1200 ttacccaggg acttgattgc tgattataga tacatcaaaa ctcacctcgg ttcaaaattg 1260 ggcaactttg ctataatgag attctctggc gaagcaagca cattcctgtt caatactatg 1320 gctaacgcat tattcacctt ccttaggtac gatactagag gagatgagta catttgcttc 1380 gccggtgatg atatgtgtgc ttcaaaacac ctgaaggtga gtgaaaagtt caatgatttc 1440 ctctccaaat taaaactgaa ggcgaaagtg cagttcacaa aaaacccaac cttctgtggt 1500 ggttggtccc tattgccttt cggtattttc aagaaaaccc cactggtcta tgacaggata 1560 tgtatagcta gggagaacaa gaatttgcac aattgtattg acaattatgc tattgaattg 1620 tcttatgcct acaagagggg tgaattagct gtcaatacca tgagtgaaga ggaaactgat 1680 gccttctata attgtgtgag agtcatcatc aagagaagtc acttgctgaa gagtgatgtg 1740 aggcaggtgt tcctcaatcc aatcttgatg gaaagtttgc attaagctta gatcatcgct 1800 attggtattg attagatgga agtgtcatta aataatttgc tagagtgtgg ttttcatagg 1860 aatatagttg ctttcgattt acctatcata gtacttgctg tgcctggtgc tggaaaaact 1920 tcttgtattc ggaggttgtt aagagaagac tccagatttg aagcctggac tttcggtgtt 1980 gcagaccatc acaattgttc tggacgcttt attcggggaa ttactgagga ttccaaacct 2040 actggtgggg atttcataat tgtggacgaa tttcagaggg gcgattggaa aagtttcaag 2100 ccttttgcca tcttgggtga catagcacaa cttatgctca aaactaacgt caaatttagt 2160 agtgctttct ctaagtgctc atcacatcga gtacctctgc cagtcgtgaa acttttacaa 2220 gaattcgatt ttgagatcgc tggcgagaga gcgggtttac tggaaatcaa gagcttattg 2280 ggggctgagc cagaaggggt agttgtctgt ttcgaacgtg aagtttgcga ctttctggat 2340 tacaatcaag tggagcacaa gagtccgaac gacatcgtcg gtttggaatt tcctattgtc 2400 tctttgatca tctcagggaa ggacattatc ggcagacaag gggctgagtt ttatgtgtgc 2460 tgcactaggg catctgacaa attgctgatc atcacaccaa atcctgaaga ttttcataag 2520 gggcccaatg ccattgatag ctcctcctaa caattcaaat tcaattttgg ccttggccgt 2580 gggagctggg cttgctttag tgatttacac gctcagatca aatcagttac cgaacgttgg 2640 tgataatatc cattcactcc cccacggcgg tttgtataag gacggcacca aaaccgtgca 2700 atacttctcc cctgctaggg ttccgaataa ttggtttaag ggcccaaaca acatccaggc 2760 tttagctctg gtgttactta ttgtgggtct tctccatctc ttacctgcta gggtaaacag 2820 aggatgcaat tgtcacaagt agtaatttgc attagttctt gtattatagt gttactcggt 2880 cttaacgcat tagaatcctt tttgaataat tctagtacta gctgtaccgt tattctcacc 2940 ggcgaaagtg tcaagattgt cggttgtgaa ttctcattaa gtttcattga atacgccaaa 3000 ctctgcgagt tgcaaagaat tggtgatctt taagtttgca gaagtgattt tgataaagat 3060 ggcggagcaa cagaaagctg cggaagagaa ggctagagta gaagctaagc tcaaggctca 3120 gttagagcaa caacaggcca agcttgggtc agagaaggaa ttcatcaagg atgcggaagg 3180 gctgcaaaaa tcactattgg aacgattcca agctctccag gacctgacag ctaaaagcat 3240 agctgggacc tcaatcgtga atgggggttg ggaggcagac aggaaaagat tgaaagtttc 3300 ggacaagatg aagttggacg gatcgaacat cttcactaga cccactttgg acgatctcca 3360 aaaactaggc tggaatccgg aggccaacca ggtggctacg gcagaaaatc tggccaagat 3420 tagtgccaaa ttgaaagaac tcggagttcc tccggagcag atggctagaa ccttctggga 3480 tgtggcaatg tactgcacag cagttggagc atcaagatat accaaccctc agggttcgat 3540 caattatcct gagggttcca taactagaga tgcggtcttt ggggtaatcc gggaacaatg 3600 cacgctgagg caagtttgca ggagttttgc tcctatcatt tggaattaca tgcatgtgaa 3660 taatatgccc ccaactaatt gggcggagaa aggtttcagc aatgatacca aatttgctgc 3720 tttcgacttt ttcgactttg tcgaatgtcc agcgtcaatc cagcctgctg atgggctgat 3780 caggcgtcca acatctgatg aatatgtcgc tttcaacact cacaagaaat gtgccttggc 3840 gagagctgac aaaaatgggc gatacgccag cactgatgcg tcaatcactg gagggatgtt 3900 tgggtgtgga gccaaagaaa attggcgtaa taatgcgtgc taatgtgtgt gcggttgcta 3960 gtaaaaccta aataatgtat aagctagaac ctataaaatt aagtgtgttt taatatattt 4020 ttaatgcttt gaaaaaaaaa aaaaaa 4046 //