ID HM037923; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC HM037923; XX DT 27-APR-2012 (Rel. 112, Created) DT 27-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Cotton leaf curl virus isolate Sirsa-Haryana-En(P) segment DNA-A, complete DE sequence. XX KW . XX OS Cotton leaf curl virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2754 RA Chakrabarty P.K., Sable S.V., Kalbande B.B., Chavhan R.L., Monga D., RA Koundal V., Kumar D., Pappu H.R.; RT ; RL Submitted (27-MAR-2010) to the INSDC. RL Division of Crop Improvement, Central Institute for Cotton Research, Post RL Bag No. 2, Shankar Nagar, P.O., Nagpur, Maharashtra 440010, India XX DR MD5; 1787ffe353f63d74f4b84f66844aa1d0. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Cotton leaf curl virus" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /isolate="Sirsa-Haryana-En(P)" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="P.K. Chakrabarty, Suchitra Sable and Dilip FT Monga" FT /collection_date="Aug-2009" FT /db_xref="taxon:53010" FT gene complement(76..807) FT /gene="AC5" FT CDS complement(76..807) FT /codon_start=1 FT /gene="AC5" FT /product="ac5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:I1SZD8" FT /protein_id="AEI52856.1" FT /translation="MRIVHGDSCIPFAQNIKYLSKILRFINRSTISNQEKHHTIRVILR FT LNVLIHPYLTQHINRLDTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF FT TSSRNIWTSVHPVHPGLPVQRPVCPCLLFCDADNGGSSTAGVWAAEVQTPAYFRRGRRN FT DDIGSSLRHNYGSVKYKLNPVLTRTQAYPVNNPATKVANISQKAYTETREPYQGIRLIV FT DPTCLNLKLSAQVLIVCGSVI" FT gene 132..488 FT /gene="AV2" FT CDS 132..488 FT /codon_start=1 FT /gene="AV2" FT /product="precoat/movement protein" FT /db_xref="GOA:I1SZG0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I1SZG0" FT /protein_id="AEI52850.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAFEQ FT EAQDVQDVQKSRCS" FT gene 292..1062 FT /gene="AV1" FT CDS 292..1062 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I1SZD3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I1SZD3" FT /protein_id="AEI52851.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPLNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNILRKWY FT ATVTVDNTHRERNRLFDNEPSTATGEECSSKVSSLVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1065..1469) FT /gene="AC3" FT CDS complement(1065..1469) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="ren" FT /db_xref="GOA:I1SZE8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I1SZE8" FT /protein_id="AEI52852.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKNQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLY" FT gene complement(1162..1614) FT /gene="AC2" FT CDS complement(1162..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:I1SZD5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I1SZD5" FT /protein_id="AEI52853.1" FT /translation="MRSSSHLIDRCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT AESSGTAQVFSNLPNLDDLTASDWSFLKGIQKPSPQISEQSRCNFN" FT gene complement(1511..2599) FT /gene="AC1" FT CDS complement(1511..2599) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:I1SZD6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I1SZD6" FT /protein_id="AEI52854.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWADENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2143..2445) FT /gene="AC4" FT CDS complement(2143..2445) FT /codon_start=1 FT /gene="AC4" FT /product="ac4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I1SZD0" FT /protein_id="AEI52855.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2754 BP; 737 A; 559 C; 624 G; 834 T; 0 other; accggatggc cgcgcgattt ttttggtggg ccttaccatt aacacttgtc ggccaatcat 60 atgactccct caaagctaaa taacgctccc gcacactata agtacttgcg cactaagttt 120 caaattcaaa catgtgggat ccactattaa acgaattccc tgatacggtt cacgggtttc 180 ggtgtatgct ttctgtgaaa tatttgcaac ttttgtcgca ggattattca ccggatacgc 240 ttgggtacga gttaatacgg gatttaattt gtattttacg ctcccgtaat tatgtcgaag 300 cgagctgccg atatcgtcat ttctacgccc gcgtcgaaag tacgccggcg tctgaacttc 360 ggcagcccat acaccagccg tgctgctgcc cccattgtcc gcgtcacaaa acaacaggca 420 tggacaaaca ggcctttgaa caggaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtattagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgtcaagtct gtttatgtgt tgggtaagat atggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atattctgcg caaatggtat 780 gcaactgtca ccgtggacaa tacgcatcgt gaaaggaaca ggctgtttga taatgagccc 840 agtacggcga ctggtgaaga atgttcatca aaggtatcaa gtttggtcaa gaagtttgtc 900 agagttaaca attatgttgt ttacaatcaa caggaagcag gaaaatacga gaatcatacg 960 gaaaatgcgt taatgcttta tatggcttgt actcacgcta gcaaccctgt ttatgctacg 1020 ttgaagatta ggatatattt ttatgactct gtaacgaatt gatattaata aagtttaaat 1080 tttatttctg aatattgatc tacatacata gtttgttgga ttacattgta caatacatgt 1140 tctacagctt taataactaa attaattgaa attacaccga gattgttcag atatttgagg 1200 acttggtttt tgaataccct taagaaaaga ccagtctgag gctgtaaggt cgtccagatt 1260 cggaaggtta gaaaacactt gtgcagtccc agagctttcc gcgtgttgta gttgaactgg 1320 atcctgatcg tgagtatgtc catattcgtc gtgaatggac ggttgacgtg gctgatgatc 1380 ttgaaataaa ggggatttgg aacctcccag atatatgcgc cattccctgc ttgagctgca 1440 gtgatgggtt cccctgtgcg tgaatccatg gttgtggcag ttgattgaca gataataaga 1500 acacccgcat tcaagatcta ctctcctcct cctgttgcgc ctcttcgctt ccctgtgctg 1560 tactttgatt ggtacctgag tacatcggtc tatcaagtgt gatgaagatc gcattcttta 1620 aagcccaatt ttttagtgca gaattcttct cttcatccaa aaactcttta tagcttgaat 1680 tgggtcctgg attgcagagg aagatagtgg gaattccgcc tttaatttga actggcttcc 1740 cgtattttgt atttgattgc cagtcctttt gggcccccat gaactcctta aagtgcttta 1800 ggtaatgcgg gtcgacgtca tcaatgacgt taaaccaggc gtcattactg tatacccttg 1860 ggctcagatc tagatgtcca cacagataat tatgtggacc taatgatctg gcccacatcg 1920 tcttccccgt cctactgtca ccctcaatca ctacacttat tggtctattg gcccgcgcag 1980 cggcactgac gacgttctcg tcagcccaca cttcaagttc ttctggaact tgatcgaaag 2040 aagaagagga aaaaggagaa acataaggag ctggtggctc ctgaaagatt ctgtctagat 2100 ttgcatttaa attatgaaat tgcagtacaa aatccttagg agctagttcc ttaatgactc 2160 taagagcctc cgacttactt cccgcgttaa gtgctgcggc gtaagcgtca ttggctgtct 2220 gttgccctcc tcttgctgac cttccgtcga tctgaaattg cccccagtcg agaatgtccc 2280 cgtccttctc gatgtaggat ttgacgtcgg agctggattt agctccctgt atgttcggat 2340 ggaaatgtgc tgacctgctt ggggagacca agtcgaagaa tcgcatattc tggcacttga 2400 atttcccttc gaactggatg agaacatgca agtgaggagt cccatcttcg tgaagctctc 2460 tgcagattct aatatatttt tttgaagttg gggtttgtat atttaataat tgggaaagtg 2520 cttcctcttt ggtgagagaa catttgggat aagtgatgaa atagtttttg gaataaatac 2580 cgttccgctt tggaggcatg ttgactaaaa ttgatcaccg attgaccgct cttgcaactc 2640 tccccggtat atcggtgatc aatatatagt gatcaccaaa tggcataatg gtaataaaaa 2700 aactttaatt tgaaattcaa accaaaaggc taaagcggcc atccgtttaa tatt 2754 //