ID HM032711; SV 1; linear; genomic RNA; STD; VRL; 4012 BP. XX AC HM032711; XX DT 01-APR-2011 (Rel. 108, Created) DT 01-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Radish mosaic virus isolate TW segment RNA2, complete sequence. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-4012 RA Wang C.-C., Bau H.-J., Chen Y.-K.; RT "Molecular characterization of Radish mosaic virus in Taiwan"; RL Unpublished. XX RN [2] RP 1-4012 RA Chen Y.-K., Wang C.-C.; RT ; RL Submitted (22-MAR-2010) to the INSDC. RL Plant Pathology, National Chung Hsing University, 250 KuoKuang Road, RL Taichung 40227, Taiwan XX DR MD5; 52cd0f2cf586eaa67b7729f92392502e. XX FH Key Location/Qualifiers FH FT source 1..4012 FT /organism="Radish mosaic virus" FT /segment="RNA2" FT /host="Raphanus sativus" FT /lab_host="Brassica campesitris" FT /isolate="TW" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /collected_by="Yuh-Kun Chen" FT /collection_date="Dec-2006" FT /identified_by="Yuh-Kun Chen" FT /db_xref="taxon:328061" FT CDS 392..3700 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:F2VU27" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F2VU27" FT /protein_id="ADZ55759.1" FT /translation="MTYFSPQNHFVNYILARHGCILARHGCDEDSGDFRVSPQQKYNEL FT LVQSPLKFVFFIFFFHFVVFVERLFGFRFAADSWLSYRFQGLWRSLRKPIEFAKARQAA FT LAKFAPQPFVFLDPIITYSSDSGLDMEQVMERGVAAKALMVQDKVSINKKHKYEGIKDC FT IPSGKDMYVFRQKMFDVLMRRRRSKEVDITRIEGSEIIEMKHMDVGTLTPGENVVLSVK FT LVDDDSVLNTKASDYTLHHSARESKYATAMHVGAIEVIFDSFASPSSDIVGGVVLVDTA FT HKTVENAVRSVFVTGLAGGKMIRVLMYPNTLVEIGPKMNERFKLVCTTSNSDIADGFNL FT AAVKVNVVGCTQSLTARYVPQPFLEQCLNEERGTVVEYLGQMSYVMHNSNEISEEFLAQ FT QTMAFDLGSNLRLQGSSSGVSLQRATSMRYLVGPRQSFKQLEPDKEPSAFERKKLEAKD FT GADKFRDSTFVDPVYGKTRRAFGQTSMTRSLLNRFSSANETEGTPLDTKIARTKILLTK FT VMAGGKILYTARLSDVLLNKDQRAAISFQRTHVQHRKLVALATLGVPENTGCALMMCYN FT SGVRGKAVVDAYTASAEASVIWNPACQRQAMLEIDVNPCQSGWSYQYLRQTNSYFNVVC FT ISGWTTTPLTDLSMTIDWYLSSEESVTSIYYASGGNSVIKLNRWMGRLIFPQGTDTTMQ FT RMPLAIGGGAGGNGLVYMNMPNALCSLWRYIKGGVKFEVIKLSSPYVKATIAFFIAFTD FT VDATLPNLEAYPHKLVQFAEIQDRVTIEFDKDEFVMAWSSQVHTNVPIDQDGCPYLYAV FT VHDCAGSTIPGDFNIGVVLKEMVDVEAIGRHPGWKGARPLPASPQGLRKSSSGVWNELY FT TIRGPPEAKSTEVVQFAIDLIGVGISTAGRGTWSLETSNSPMNNLLRTATWKSGTIHFQ FT VLMEGNPLIKRGDWASYCEISLVQSAKDTTLSSRNWVMKDPSSWELEFDTKIEGPNAGF FT ENWEAHLSNQTSWYLTFAVYNPDQTTVFTVNGMLNDDFCCAGNTLMPPFLEPQSLASDR FT TPLSQMTFSYEDNLVRNVDPPDPDTVQERPETSSDQERRLQQQRKRGFNNKFAF" XX SQ Sequence 4012 BP; 1120 A; 760 C; 970 G; 1162 T; 0 other; tattaaaatt ttattgaaat tttgataaac cgcaatcagg accagtgtcc gaactgttac 60 ttttgaactc aattttcaac gaaagcaggt aattggctta caaaccgatc agactgtcat 120 tgagaacaaa acaatcaggt tacgttaaag taaggacact cgtattgttc cactggtgct 180 tttgcatctt tgggcattac agttaccttg ttgtttgcat tcctaaccag acgaaggtgg 240 gtaacgagct tttaaacttg tcagaccacc acaggaaacg atagtgcgat ttcacattgc 300 tgtgcctctt ggagaatatc agatattgtg gaagcgtgcg ccggggtttg aagttacgcc 360 cgtctaaaat cgattaaatc attggacgtg aatgacttac ttttcccctc aaaatcattt 420 tgtgaattac atattagcta ggcacggttg catattagct aggcacggtt gcgacgaaga 480 ttcaggggac ttccgagtct ctcctcaaca aaaatataac gaactgctag tacaatctcc 540 tttaaagttt gttttcttta ttttcttttt ccattttgta gtttttgtag aacgcttgtt 600 tggatttcgg tttgccgcag acagttggtt atcgtaccgt tttcaaggtt tgtggagaag 660 tttgagaaag cccatagagt ttgctaaagc tcgacaggct gctttagcaa aatttgcacc 720 acaaccattt gttttcttag atcccattat cacgtattca tcagacagtg gtttagatat 780 ggaacaggtt atggaacgtg gagttgcagc gaaagccttg atggtgcaag acaaagtatc 840 aatcaataag aaacacaagt atgaaggcat caaggattgc attccatcag gaaaggacat 900 gtacgtcttt cgtcagaaaa tgtttgatgt gttgatgcgc cgaagaagga gcaaggaagt 960 cgacatcact cgcattgaag ggagtgagat aatagaaatg aaacacatgg acgttgggac 1020 tttaactcct ggtgaaaatg ttgtgctgag tgtcaagctt gttgatgatg atagtgtttt 1080 aaacaccaaa gccagcgatt atactcttca ccattccgca cgtgagtcaa agtacgccac 1140 agccatgcac gtcggagcta ttgaagttat ttttgatagt tttgcgtccc cttctagtga 1200 catagttggg ggagtggttt tagtggacac agctcataaa acagttgaaa atgctgtgcg 1260 gagtgtgttt gtgacaggat tggcaggtgg aaagatgata cgtgtgctca tgtacccaaa 1320 cacactagtc gagattggac ccaagatgaa tgagagattc aaattagtgt gtaccacttc 1380 taacagtgat attgcagatg gttttaatct ggctgcagtc aaagtaaatg tggtgggatg 1440 tactcagagt ttaactgcac gatacgtgcc gcaaccgttt ttggaacaat gcctcaatga 1500 ggagcgtggc accgttgttg agtacttagg acagatgtct tacgtgatgc acaattccaa 1560 cgagatatct gaagaatttt tggcacaaca gacaatggcg tttgatcttg gaagcaacct 1620 acgtctgcaa ggatcctcat ctggagtgtc tttgcagcgt gccacctcaa tgagatattt 1680 ggttggccca aggcaaagtt ttaaacaact ggagccagat aaagaaccgt cagcatttga 1740 aaggaaaaaa cttgaagcga aggacggcgc agataaattc cgtgactcaa cgtttgtgga 1800 ccctgtgtat gggaaaacga gaagagcttt tggacagact tctatgacgc gctctttgct 1860 taacagattt tcctctgcca acgaaacaga agggactccc cttgacacca agatagcaag 1920 aacaaaaatc ttgctcacaa aagttatggc ggggggaaag attttgtaca cagcgcgttt 1980 aagcgacgtt ctcctaaaca aagaccagag ggctgccatt tctttccaga gaactcacgt 2040 ccaacacagg aaattggtgg ctttagcaac tttgggagta ccagaaaaca ctgggtgtgc 2100 tctaatgatg tgctacaaca gtggagtacg aggaaaggcg gtcgttgatg cttatacagc 2160 gtcggcagag gctagtgtga tctggaatcc tgcctgtcaa cgacaagcaa tgctggaaat 2220 agatgtcaat ccgtgccaga gtgggtggag ctatcagtat ctcagacaaa ccaacagcta 2280 ctttaatgtg gtatgcattt cgggttggac aacaacgcct ctaacggatt tgtctatgac 2340 catagattgg tatctgagct ctgaagaaag tgttacgtcc atatactatg cttcaggggg 2400 aaattctgtg ataaagctga acaggtggat ggggcggtta attttcccac agggaactga 2460 tacaacaatg caacgcatgc ccttggccat aggaggtgga gctggaggaa atggattggt 2520 gtatatgaat atgccaaatg ccttgtgctc tctatggagg tacatcaaag gaggagttaa 2580 gtttgaggta ataaagctga gctctcccta tgtgaaggca accatagctt tcttcatagc 2640 ttttaccgat gttgatgcaa cactacccaa tcttgaagca tatcctcaca agcttgtcca 2700 gtttgcagaa attcaggaca gagtgacgat tgagtttgat aaagatgagt tcgtcatggc 2760 ctggtcttcc caagttcata ccaatgtgcc tatagatcag gacgggtgtc cttatttgta 2820 tgctgtggtc cacgactgcg caggatcgac cattcccggt gattttaaca taggagttgt 2880 cttgaaagag atggttgatg tggaagctat aggaagacat ccgggatgga aaggggctcg 2940 ccctttgcca gcgtcacccc aaggactgcg taagagttca tcaggtgtgt ggaatgagtt 3000 gtacacaatt agaggccctc ctgaggctaa atccaccgag gttgttcaat ttgcaattga 3060 tctcataggt gttggcattt ctaccgcagg acgtggaaca tggtcattgg aaactagtaa 3120 tagccctatg aataatttgc tgcgtacggc cacgtggaag agcggaacaa tccactttca 3180 agttcttatg gaagggaatc ctttgatcaa gagaggagat tgggcctcat attgtgaaat 3240 ttcactggtc cagagcgcta aagataccac gctatcaagc cgtaattggg ttatgaaaga 3300 tccttcctca tgggagctgg agtttgatac caagattgaa ggaccaaatg ctggttttga 3360 aaattgggag gcccacttga gcaaccaaac aagttggtat ttaacgttcg cggtttacaa 3420 ccctgatcaa accactgtgt ttactgtgaa tggtatgctt aacgatgatt tctgctgtgc 3480 tggtaataca ttgatgcctc ctttcttaga gccacaaagt ttggcttcag acaggacacc 3540 tttgtcacag atgaccttca gctatgagga caacttggtg aggaatgttg atccgccaga 3600 cccagacact gtacaggaaa ggccagaaac tagcagtgat caagaacgta gattgcagca 3660 gcagaggaag cgtggcttca acaataaatt tgcattttag acgggtttcc ttcaagcatc 3720 tctctcagtt ttcttttgtt ttggtgtgtt tgtagtttac ttgtttcttt ttgttttctt 3780 atctagagat tttaggttct agcatttatt ttcttttaat ttgtgtgttt acaaattttt 3840 atgttaattt gaattttaga gtaaatcttc tttggatgtt tgaaagtctg tggaaacatt 3900 ccggttcagg gagcaggacc gcctaggagg taggactctg ggtttatttg ctctcatatg 3960 ttataaatag aatacatttg cttacttttg ttatagagtg tgttttcttt tt 4012 //