ID HM030973; SV 1; linear; genomic RNA; STD; VRL; 2653 BP. XX AC HM030973; XX DT 06-FEB-2011 (Rel. 107, Created) DT 06-FEB-2011 (Rel. 107, Last updated, Version 1) XX DE Santeuil nodavirus isolate JU1264 segment RNA2, complete sequence. XX KW . XX OS Santeuil nodavirus OC Viruses; Riboviria; Nodaviridae; unclassified Nodaviridae. XX RN [1] RP 1-2653 RX DOI; 10.1371/journal.pbio.1000586. RX PUBMED; 21283608. RA Felix M.-A., Ashe A., Piffaretti J., Wu G., Nuez I., Belicard T., Jiang Y., RA Zhao G., Franz C.J., Goldstein L.D., Sanroman M., Miska E.A., Wang D.; RT "Natural and experimental infection of Caenorhabditis nematodes by novel RT viruses related to nodaviruses"; RL PLoS Biol. 9(1):e1000586-e1000586(2011). XX RN [2] RP 1-2653 RA Wang D.; RT ; RL Submitted (23-MAR-2010) to the INSDC. RL Molecular Microbiology, Washington University in St. Louis, 4940 Parkview RL Place, St. Louis, MO 63110, USA XX DR MD5; ed9428feaeecea0441434fd63994e536. DR EuropePMC; PMC3026760; 21283608. XX FH Key Location/Qualifiers FH FT source 1..2653 FT /organism="Santeuil nodavirus" FT /segment="RNA2" FT /host="Caenorhabditis briggsae" FT /isolate="JU1264" FT /mol_type="genomic RNA" FT /country="France" FT /collection_date="2007" FT /db_xref="taxon:977913" FT CDS 230..1255 FT /codon_start=1 FT /product="capsid protein" FT /note="protein A" FT /db_xref="InterPro:IPR024292" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E9KNV8" FT /protein_id="ADW54432.1" FT /translation="MLKGVDRIVTVKDATTLTPGKSVVSLLITPLIADRLRAASQMFQK FT IKYHKLVFRVNSQCSTMTAGGYVAGFVKDPADEIPSESVAVQYLMSNAGSYTQPWWRST FT VHNIRASQRMFFTDKPALGADAIREYSPGRFYVIVDSTPSQTCPVTVDLEWTVELREAT FT FKLPDTTTVISSIRPELSLSTYGMPNTSPMAGHVVVKPSGETPRWLTPARFQTMFGFAP FT DEDMCATIPTPVQCVLTGENAYQTVTATHFSAVLTDSAVQSFMLSAFNDVTQDIQPINH FT TWQIMDALGQIVTPFIAVIYDSAIWSATDSYTITTRTGKPVPLDVFRFLHPNATVLPPE FT N" FT CDS 1384..2382 FT /codon_start=1 FT /product="protein delta" FT /db_xref="UniProtKB/TrEMBL:E9KNV9" FT /protein_id="ADW54433.1" FT /translation="MAALQASVLTQGRPSDDYTAWFNETVGPKFDELITQIKIIADCVS FT DNQIRAKLDQVVKVEVENEVPVRVEHEVKVHVENEYLPVRNRYIHLEEVEFPEPLFVLA FT AEKDVSGHSKKFECEITNEPKVHIEGQPLQVDIANQPIRVTGDEPGSNHVIIDNFPEVQ FT HVILDNHVVIGNPDPITVTIDPESTVNVVGYVDANIINSVVLPVDVVKPISVDNFPTTV FT TVDNGFSDPIPICQLIRTLEATDMPANNVGGTGVFRELSTQHPLPSYQVGPDNGEHHLM FT APQGAVFPRAVTTDGYVWADSQYARLPDVYLHEVIGGGHRTVISVKDQPHE" XX SQ Sequence 2653 BP; 737 A; 766 C; 612 G; 538 T; 0 other; taatgacgca agtcactact tgggcctcac aaccccgtga aaacgacgat ggattggtac 60 tccattgtaa tagtgctgtc aaaccaacaa gaacaacaag aagaacataa gccggaagct 120 gaaaccggcg aaacaacagc cacctcgtaa aagaaatact caacgaagaa gtgctctcgc 180 accgatcgct cgttccaacc aacttcgaca gaccaacgga aattctatca tgctcaaggg 240 tgtggacagg attgttacgg ttaaagacgc aacaaccctg actcccggaa aatccgttgt 300 ttcactcctc ataaccccgc tcattgccga tcgtttgcgc gcagcatcac agatgttcca 360 gaagatcaag taccacaagc ttgtctttcg tgtgaacagt cagtgttcga caatgactgc 420 cggtggatac gtcgcaggct tcgtaaaaga cccagccgac gaaatcccga gtgagtccgt 480 tgcagttcaa tatctcatgt ccaatgcagg atcatacacc caaccatggt ggcgatccac 540 tgtccacaac atcagagcgt cccagcggat gttcttcacg gacaaaccag cactgggcgc 600 cgacgcgatc cgagagtact ctccaggcag attctatgtc atcgtcgatt ccactccaag 660 tcaaacatgt ccagtcaccg tcgacctgga atggacagtg gaattgagag aagctacctt 720 caaattgccg gacactacca ccgtcatctc cagcatccgc ccagagctct ctcttagtac 780 atatggaatg ccaaacacat caccaatggc tggacatgtg gttgtcaaac ccagcggaga 840 aacaccccgc tggctcacac ccgccaggtt ccaaactatg tttggttttg cgcctgatga 900 agacatgtgt gccaccattc caaccccagt ccagtgtgta ttgaccggag aaaatgccta 960 ccaaacagtc accgcaacgc atttctccgc tgtgcttacc gacagcgcag tccaatcgtt 1020 catgctatcc gctttcaatg atgtcaccca agacattcag ccgatcaacc acacgtggca 1080 gatcatggat gcactcgggc aaatcgtcac acccttcatc gccgtcatct atgactccgc 1140 catctggtcc gctactgaca gctacaccat caccaccaga accggaaaac cagtaccgct 1200 ggatgtattc cggttcctac accccaatgc caccgttctc ccaccggaaa actagcttgg 1260 ggtaatgtcg tgcagcagac aggacccaac gaactctaca tccaatggat ctcccatcag 1320 gtgtttcagt cgcaactaac tcggccgagc aacgactatg acgcatggta cataagggca 1380 accatggcag cattgcaagc atctgtccta acacaaggca gaccatcaga cgactacaca 1440 gcgtggttca atgagaccgt cggacccaaa ttcgacgagc tcatcacgca gattaagatc 1500 atcgccgatt gcgtctctga caaccaaatc agggccaaac tggaccaagt agtcaaagtc 1560 gaagtggaga atgaagtacc agttagagtt gaacatgagg tcaaggtgca tgttgagaac 1620 gagtatttgc cagtcaggaa caggtatatc catcttgagg aagtcgaatt ccccgagccc 1680 ctgttcgtgt tagcggccga gaaggacgtc tcgggtcact caaagaaatt cgagtgcgag 1740 ataacgaatg aacctaaggt ccacatagaa ggtcagcctt tgcaagtaga tatcgccaat 1800 caaccgatcc gggtcaccgg agacgaacct ggttccaatc acgtcatcat cgacaacttc 1860 ccagaagtac aacacgtgat tttggataac cacgtcgtca tcggcaaccc tgaccccatc 1920 acggttacta tcgatccaga atcgacggtc aacgtggtgg gttacgtaga tgctaacata 1980 atcaactcag ttgtactacc agttgatgtc gtgaagccta tatcagtcga taacttccca 2040 acaacggtca cggtggacaa cggattcagt gacccgatac ccatctgcca gctcatccgc 2100 actctcgaag ccacggacat gccagccaac aacgtcggag ggaccggagt attccgggaa 2160 ctttcaactc agcacccact gccgagttac caggttggac ccgataacgg cgaacatcac 2220 ctcatggcac cgcaaggagc agtcttccca cgagcagtca ctactgacgg ctatgtttgg 2280 gccgactcgc agtacgccag actacctgac gtctatctac atgaagtgat cggaggaggc 2340 caccgcacag tgatctccgt caaagaccag ccgcacgagt gacgtggttt acgttcaacg 2400 agagtcgatg gccagcgttg gagggcatca aacgtcgttt gacaggtacc agcgactaga 2460 tccggtgtag cccgctgcta caacacacac tgacatgtgt gcaaccgctc accccgccac 2520 gggggtgcac cctaacaggg atgaaaagta cgtggccgct acccacaagc gttaaatggc 2580 ggagtgtcag ctccgcaaga ccgtgggaat ccacatactt ccgcaaggtt gatgtggatt 2640 ttaaaaaggt cgt 2653 //