ID HM030972; SV 1; linear; genomic RNA; STD; VRL; 3628 BP. XX AC HM030972; XX DT 06-FEB-2011 (Rel. 107, Created) DT 06-FEB-2011 (Rel. 107, Last updated, Version 1) XX DE Santeuil nodavirus isolate JU1264 segment RNA1, complete sequence. XX KW . XX OS Santeuil nodavirus OC Viruses; Riboviria; Nodaviridae; unclassified Nodaviridae. XX RN [1] RP 1-3628 RX DOI; 10.1371/journal.pbio.1000586. RX PUBMED; 21283608. RA Felix M.-A., Ashe A., Piffaretti J., Wu G., Nuez I., Belicard T., Jiang Y., RA Zhao G., Franz C.J., Goldstein L.D., Sanroman M., Miska E.A., Wang D.; RT "Natural and experimental infection of Caenorhabditis nematodes by novel RT viruses related to nodaviruses"; RL PLoS Biol. 9(1):e1000586-e1000586(2011). XX RN [2] RP 1-3628 RA Wang D.; RT ; RL Submitted (23-MAR-2010) to the INSDC. RL Molecular Microbiology, Washington University in St. Louis, 4940 Parkview RL Place, St. Louis, MO 63110, USA XX DR MD5; f120912b9b1855c9e98fa32ac536d9c0. XX FH Key Location/Qualifiers FH FT source 1..3628 FT /organism="Santeuil nodavirus" FT /segment="RNA1" FT /host="Caenorhabditis briggsae" FT /isolate="JU1264" FT /mol_type="genomic RNA" FT /country="France" FT /collection_date="2007" FT /db_xref="taxon:977913" FT CDS 609..3557 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="protein A" FT /db_xref="GOA:E9KNV7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E9KNV7" FT /protein_id="ADW54431.1" FT /translation="MESSPITPSRKGFLAKTQDAATTFIRHSVPIPVLGMIRALEVLTG FT SKVAAVLLTPTSLIAAVNQLYRWIAYLAAKRTGVKIPKVFSFGIHAFSLYLVYKFARIV FT YHWVFNKDLAENAIRQRDNWTAISLWAGVQIHGEVKARMFRPLLPANHTTHRSWTTVED FT TIVLTTNDQTTHHPNLIAWNGEIVLTQDICFPLHVSCSRRPGDTLFIDYVFKRSSNIAP FT HSITGTLFSTDLMSNNQYSCRSEWHGGALNVYLAPARSYTTFSTTRKNWETIMHQFTVN FT GAKAQNYTVMNLLQTLIPTSQQADRLFAGGLIASYWNRCADMDVIEERVRHRGEIQFVN FT DVRDDKFAPWKLTGRTVGPHFVTTPNTMPYKGHQNDLSAIEFRLDAKRNPHETLSQNVH FT AKMDEFVKLLNPQKIHRWTHRQVIENQTKPMQIRRNEEAAKVIGWLHALKCKVKAMLKV FT EAINQSGATRNISTVGAEFNLEYGSFMLPAAEWLKQNTKWYTAGKPPKEIAIRVRELAT FT QARTRNAEPYLCCADVSKMDAGKHVEITAYLLSVIYFSMFPDDIDTLANLRTTEATAEA FT HTNTGMKYKIGGSQLSGSASTTIDNTVTNAFISYYAHRVEGRCPTEAYAALGIYVGDDS FT VSHNTTESIEQAGRDLGYTLTSEIIKEGEPVPFLSRYFYQPWEQGLSSFQDPMRLLSKL FT HLSIAPMYIPDATAFLNKMRGLTELDPAIFLYKALYDKMQDLVGIVGTSNSDDTPWYTR FT TFGAGESWPTDHEAQIRWEAIVGIAPNTYATWLLKIHTYEQLMTIAPPKADNTAKPKLQ FT HSLDPTVPGVEAPPSTDPAPDHATIGVSQSSAIDLMNAIEDKVEFAIANVASRMSRGLP FT PAPRSLLAPQTDRQPGENQDCLFGPNEKKKKKKSGPPTAKHRAAPAVTPTAPPAEEEPT FT TAPSAPAPAPIPIEDLMAMADAGNLRRPRRSTVPNPNASHPRGRPPPPSGVT" XX SQ Sequence 3628 BP; 1011 A; 1128 C; 826 G; 663 T; 0 other; tattatcata ctgacaatgg taatatgcga gagcgatagc aagcactaga aacgagttac 60 gcaaccacag acagcaagcc cggaaggcgc gcagagactg aacacctctg tgtggctgaa 120 ggctccccac taaccctgga gagaagtggc agaaccacag cctagtacta gccgcaaggc 180 ttaagaaact aggtgtagct gagtcctttc ccttaaacaa ggattggacc acttgtagga 240 tccgtgtatt caaacgatct ggcagcacta tggctcggac aggtacaacc aataaacaca 300 agcgttttga gaaaccggcg tgattgtacc gcagttttaa aggagcttca aaccctccca 360 gccgaaagat caaacgaagt cgtagttgaa ctaacgtagt aggggagcgg cgtttgagga 420 tgttcacggg tcagtaacgt gaatagcttc attcgtgacg tgctcaaacc accgtatagg 480 ttcgccttag tcattagcag ggatggctag gttcagctgc gcatgcacaa accacaacaa 540 taaactaaac tttattcgcg tatttgtgca ttcccgttgc ccacccacac tcctaacaaa 600 tttcaagtat ggagtcgtca ccaatcaccc cctctcgaaa aggcttccta gctaaaacgc 660 aggacgccgc cacaaccttc atccgccact cagtcccaat ccccgtactc ggtatgattc 720 gggcccttga agtgcttact ggaagcaaag tagccgcagt gctcttgacc cccacttctc 780 taatcgcagc cgtcaaccag ctttaccgtt ggattgctta tttggccgct aagaggacag 840 gagtcaagat cccaaaagtg ttttcgttcg gaatccacgc attctcgttg tatctggtct 900 acaagttcgc gagaatcgtg taccattggg tcttcaataa ggacctcgcc gaaaacgcca 960 tccgtcaacg tgacaactgg acagccatct ccttgtgggc tggagtccag atccacggag 1020 aagtgaaagc tcggatgttt agaccactgc tacccgccaa ccacacaacg caccgctcat 1080 ggaccacagt agaagacaca atcgtactca cgaccaacga ccagaccaca caccacccca 1140 acttgatcgc ctggaacgga gagatcgtcc tcactcagga catctgcttc ccgctccatg 1200 taagttgttc cagaaggcca ggagacacgt tattcatcga ttacgtgttc aaacgaagtt 1260 ccaacatcgc cccacactcg atcaccggta ccctcttctc caccgatctg atgtccaaca 1320 accagtactc ttgccgtagt gaatggcacg gaggcgctct aaacgtatac ctcgcccccg 1380 ccagatccta caccaccttc tccacgacaa ggaagaactg ggagaccatc atgcaccaat 1440 tcaccgttaa cggcgcgaaa gcccagaact acacggtgat gaatctgctc cagacgctaa 1500 tccccacctc acagcaggcc gaccgcctgt tcgccggagg gttgatcgca tcctactgga 1560 acagatgtgc cgacatggac gtcatcgagg agagagtccg ccaccgcggt gagatccaat 1620 tcgtgaacga tgtcagagat gacaagttcg ccccatggaa actcaccggc agaaccgtcg 1680 gaccacactt cgtcaccacc cctaacacca tgccatacaa aggacaccag aatgacttat 1740 cggccatcga gtttagactc gacgccaaac ggaaccccca tgagactctc agccaaaacg 1800 tccacgccaa gatggatgag ttcgtaaaac tactcaatcc acagaagatc cacagatgga 1860 cacacagaca ggtcattgag aaccagacga aaccaatgca aatccgcaga aatgaggagg 1920 ctgcaaaggt catcggttgg ctccatgccc tgaagtgcaa agtcaaggct atgctgaaag 1980 ttgaagccat caaccaatcc ggagccacca gaaacatcag cacagtcggg gccgaattca 2040 accttgaata cggttccttc atgcttcccg ctgctgaatg gctcaagcag aacacgaaat 2100 ggtacacagc tggtaaaccc ccaaaggaga tagccatccg agtaagggaa ctagccaccc 2160 aggcaagaac ccgaaacgct gaaccatatc tgtgctgcgc ggatgtctcc aagatggatg 2220 ccggaaaaca cgtcgagata actgcctacc tactctcagt catatacttc tccatgttcc 2280 cagatgatat cgacaccctc gccaacctca ggacaaccga ggccacagcc gaggcacaca 2340 cgaacactgg aatgaagtac aaaatcggag gcagtcaact gtctggaagc gccagcacca 2400 ccatcgacaa cacagtcacc aacgctttca tctcctacta cgctcaccgc gtcgaaggaa 2460 gatgtccgac agaggcttat gccgctctcg gaatctacgt tggtgatgac tcggtcagcc 2520 acaacaccac ggaatccatc gaacaagccg ggcgtgacct cggttacacc ctcacctccg 2580 agatcatcaa ggaaggcgag ccagttccgt tcctgtcccg gtacttctac caaccatggg 2640 aacagggact cagctcattc caagacccga tgcgactcct atccaaactc cacctctcca 2700 tagcaccaat gtacatcccg gacgccaccg cattcctcaa caagatgcga ggactcaccg 2760 agttggaccc cgccatcttc ctctacaagg ctctgtatga taaaatgcag gaccttgttg 2820 ggattgtcgg gacctccaac tcagacgaca caccgtggta caccaggacg tttggagctg 2880 gagagagttg gccgaccgac cacgaggcac aaattcgatg ggaagccatc gttggcatcg 2940 cccccaacac ctatgcaacc tggctactaa agatccacac gtacgaacag ctcatgacta 3000 tcgccccgcc caaagccgac aacactgcta agccgaagct ccaacactcc ctcgacccaa 3060 cagtcccggg agtggaagcc cctcctagca ccgatccggc cccagatcac gctacgatag 3120 gagtgagcca gtcgtcggcc atcgacctca tgaacgccat cgaggacaag gtcgagttcg 3180 ccatcgccaa cgttgcatcc cgcatgagtc gcggactgcc accagcaccc cgttcgctgc 3240 tggctcctca gacggaccgt caacctggag aaaaccagga ttgcttattt ggccccaatg 3300 agaagaagaa gaagaagaag agcggacccc ccacagcaaa acatcgggca gccccggcgg 3360 tgacaccaac agcaccaccc gccgaagagg aaccaacaac agcaccatcc gccccagcac 3420 cggcaccaat ccccatcgaa gatctgatgg ccatggctga cgccggcaac ctacgaagac 3480 ctaggcggtc cacggttcct aaccctaatg cctctcaccc gagaggaagg ccaccaccac 3540 ccagtggagt cacctaacgg tgactaggcc gaaacgtgtg tcagagcgcg aacactccaa 3600 cctactctga cgtcccttaa ggactggt 3628 //