ID HM007120; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC HM007120; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus-India [India/Tumkur/Chilli/2008] clone DE pChTumB2 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus-India [India/Tumkur/Chilli/2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2740 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 5327e024c0cda192eb34999f9c1fc987. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus-India FT [India/Tumkur/Chilli/2008]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Tumkur/Chilli/2008" FT /mol_type="genomic DNA" FT /country="India:Tumkur" FT /collection_date="Nov-2008" FT /clone="pChTumB2" FT /db_xref="taxon:1000684" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LD36" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LD36" FT /protein_id="AEA76850.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTIGYDLIRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LDH4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H9LDH4" FT /protein_id="AEA76851.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LCJ6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LCJ6" FT /protein_id="AEA76854.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILQHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDILGVIGI FT YNVIRAVYHVLDNVMERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LE96" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LE96" FT /protein_id="AEA76853.1" FT /translation="MQSSSHSKNHSIPVAEISLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYMGNSKSPVFQNFATRQQALPNTARHNQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LCS5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LCS5" FT /protein_id="AEA76852.1" FT /translation="MAPPRRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGIFQIDGRSARGGQQTANDAYAQAINTGNKDDALKVLKELAPKDYVLQFH FT NLITNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRGNIAPPEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LD37" FT /protein_id="AEA76855.1" FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQH FT RTSKHTSTKTETF" XX SQ Sequence 2740 BP; 749 A; 588 C; 608 G; 795 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cctatttagt gcgtggggat caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattcacc agacacaatc ggctacgatc 240 ttattcgaga tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaactggac tcacacatcg cgtggggaag 600 cgattctgtg tgaaatccgt ctatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaatag tgtcatgttt tttctggttc gtgaccgtcg tcctacagga 720 tctccccagg atttcgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcga gttttatatc atatgaagtc 1080 catacatcaa tcgttcgctc cattacatta tccaatacat gataaactgc tcgtattaca 1140 ttataaattc ctattacacc taatatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgttgcaaaa ttttgaaata caggggattt 1380 cgaatttccc atgtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacaaccac acggcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatattt ccgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattccc cctttaatca tgactggctt tccgtacttt gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaaacacc gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac accacattgg 1980 acgagaccca atcgacgagt tctggcggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaac ctcagaacga ggttgaaaaa tgcgatctaa atttgtaatc aaattgtgaa 2100 actgcagaac ataatccttt ggggctaatt cctttaatac tttcaaggca tcatctttat 2160 ttccagtgtt aatcgcctga gcatatgcat cgttcgccgt ttgttgacca ccacgagcag 2220 atcgtccatc gatctggaaa ataccccatt ctagaacgtc tccgtctttg tcgatgtatg 2280 ctttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacagatc ttgatgaatt 2460 tctttgcagt tggggtttct agggtttgca attgggaaag tgcctcttcc tttgtaagag 2520 agcactttgg atatgtgagg aaatagtttt ttgcatttat tctaaaacga cgtggcggag 2580 ccataaaact cgtcgtttcg ctctggtgtc tctcaacttt ctctatgtaa ttggtgtctg 2640 gagtcctata tataggtaag acaccatatg gcagaattgt aattttgaaa ataaaattac 2700 tttaattcaa attccctaaa gcggccattc gtataatatt 2740 //