ID HM007117; SV 1; circular; genomic DNA; STD; VRL; 2761 BP. XX AC HM007117; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl Joydebpur virus-India [India/Patna/Chilli/2008] clone DE pChPatnB9 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus-India [India/Patna/Chilli/2008] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2761 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2761 RA Singh A.K., Kumari P., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 3293c9b5880981681e1a275f15b67d21. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Tomato leaf curl Joydebpur virus-India FT [India/Patna/Chilli/2008]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Patna/Chilli/2008" FT /mol_type="genomic DNA" FT /country="India:Patna" FT /collection_date="Feb-2008" FT /clone="pChPatnB9" FT /db_xref="taxon:1000679" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LE90" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LE90" FT /protein_id="AEA76838.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQ FT EAQDVQDVQKPRCA" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LCJ3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LCJ3" FT /protein_id="AEA76839.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1073..1477) FT /gene="AC3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LCS3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LCS3" FT /protein_id="AEA76842.1" FT /translation="MDSRTGAPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDI FT ITVQVQFNHNLRKALGIHKCLLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN FT VFRAVDHVLWNVLAQTIYVQSSNIIKFNIY" FT gene complement(1218..1622) FT /gene="AC2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LDH0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LDH0" FT /protein_id="AEA76841.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFISLR FT CHDYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPPPAIPNEPRHHNSTSTVQSQP FT EESVGDTQVFTNLPNLDDLTASDWSFLKGL" FT gene complement(1525..2610) FT /gene="AC1" FT CDS complement(1525..2610) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LD34" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LD34" FT /protein_id="AEA76840.1" FT /translation="MAPPNKFRINAKNYFLTYPKCSLTKEEALSQIQTLETPVNKLFIR FT VCRELHENGEPHLHVLLQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYV FT EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPQEVYLSPFSSSSFDQVPDELEEWASENVVSAAARPLRPMSIVVEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVCSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASSR" FT gene complement(2160..2453) FT /gene="AC4" FT CDS complement(2160..2453) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LE92" FT /protein_id="AEA76843.1" FT /translation="MGNLIYTCSSNLRENSNAKITDSSTSFPHPGQHISIRTFRELRAL FT QMSKPMWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF" XX SQ Sequence 2761 BP; 739 A; 571 C; 646 G; 805 T; 0 other; accggatggc cgcgattttt ttctagtggg ccccacaacg cacgtgctga caaggacaaa 60 cggaccaatg aaattggctc ctcgttgctt aattatttaa tggtccccta tataaacttg 120 gttcccaagt agtgcactct ttccaatgtg ggatccgtta gtaaacgagt ttcccgaaac 180 cgttcacggt tttcggtgta tgctagccgt taaatatctg cagctagtag aaaagacgta 240 ttctccagat actttggggt acgatttaat ccgggattta atatcagtta tcagggccag 300 aaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccatattcca gccgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcg aacaggccca tgaacaggaa gcccaggatg tacaggatgt 480 acagaagccc agatgtgcct agaggatgtg aaggcccgtg taaggtccag tcctttgagt 540 ctaggcatga tgtccaacac attggtaaag tcatgtgtgt tagtgatgtt acgcgtggaa 600 ctgggctgac tcatcgagtc ggtaaaaggt tttgtgttaa gtccgtctat gttctgggca 660 agatttggat ggatgagaac atcaagacta agaatcacac gaatagtgtt atgtttttcc 720 ttgttagaga tcgtaggccc gtagataagc cccaagactt cggtgaggtg tttaacatgt 780 ttgataatga gcccagtacg gctaccgtaa agaacgtgca tcgtgatagg tatcaggtgc 840 tcaggaagtg gcatgcaact gtgactggtg gtcaatatgc atcgaaggag caagctctcg 900 tgaagaagtt tattagggtt aataattatg ttgtgtataa ccagcaagag gctggcaagt 960 atgaaaacca tactgagaat gcattgatgt tgtacatggc gtgtactcat gcctctaacc 1020 ctgtgtatgc tactttgaag atacggatct atttctatga ttccgtaaca aattaataaa 1080 tattgaattt tattatgttt gaactttgta cataaattgt ttgcgctaat acattccata 1140 atacatgatc gactgctcta aatacattgt ttatactaat tacagcaaaa ttatttaaaa 1200 actgcaaaac ttgggtccta aagaccctta agaaatgacc agtccgaggc tgtaaggtcg 1260 tccagattcg gaaggttagt aaacacttgt gtatccccaa cgctttcctc aggttgtgat 1320 tgaactgtac ttgtactgtt atgatgtcgt ggttcattag gaatggccgg tggtggtgct 1380 cggttatctt gaaatacagg ggatttgtta tctcccagat aaacacgcca ttctcggcct 1440 gagctgcagt gatgggtgcc cctgtgcgtg aatccatagt cgtggcagcg taatgagatg 1500 aaatatgaac agccgcagtc taggtcaacg cgacgacgcc tggtcccctt cttggctagc 1560 ctgtgctgca ctttgattgg aacctgagta gagtgggcct tcgagggtga tgaaggtcgc 1620 attctttaaa gcccaatttt tgagtgcgga attcttctct tcatccaaga actctttata 1680 gctggaattt ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggctttccg tatttcgtat ttgattgcca gtccctttgg gcccccatga attccttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccacgcgt cattactgca 1860 taccttagga ctaaggtcta gatgaccaca caaataattg tgtggaccca aagacctagc 1920 ccacatggtc ttccccgttc gactatcacc ttctaccaca atactcatgg gtctcaatgg 1980 ccgcgcagcg gcactgacca cgttctcgga agcccattcc tcaagttcat ccggaacttg 2040 atcaaaagaa gaggaagaaa aaggagaaag ataaacctct tgtggaggtg taaaaatcct 2100 atctaaatta gcatttaaat tatgaaactg taaaacataa tctttgggag ctttctccct 2160 taaaatattg agggccgcag ctttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagattgc tgacctcctc tagctgatct gccatcgatc tggaaaactc caaaatcaat 2280 gaagtctccg tctttctcca cataggcttt gacatctgta gagctcttag ctccctgaat 2340 gttcggatgg aaatgtgctg accgggatgg ggaaacgagg tcgaagaatc tgtgattttt 2400 gcattggaat tttccctcaa attggaggag cacgtgtaga tgaggttccc cattttcgtg 2460 tagttctctg caaaccctaa taaataattt atttactgga gtttctaagg tttgtatttg 2520 ggaaagtgct tcttctttag taagagagca cttgggatat gtgaggaaat aatttttggc 2580 atttattcgg aatttatttg gaggagccat tgacttggtc aatcggtgtc cagcaaactt 2640 ggctatgcaa ttggtgtctg gtgtcttatt tatatgtaga caccgaatgg cacatgtgta 2700 atttgtgaaa ttactttaat tcaaatttca aaatgcccaa agcggccatc cgtataatat 2760 t 2761 //