ID HM007114; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC HM007114; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Chilli leaf curl virus-India [India/Noida/2007] clone pChNoiB7 segment DE DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl virus-India [India/Noida/2007] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2762 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 0033ddbf4a0aa3c23509ed2cfc8161ac. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Chilli leaf curl virus-India [India/Noida/2007]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Noida/Chilli/2007" FT /mol_type="genomic DNA" FT /country="India:Noida" FT /collection_date="Apr-2007" FT /clone="pChNoiB7" FT /db_xref="taxon:1000668" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LDG3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LDG3" FT /protein_id="AEA76826.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYAPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LCS0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LCS0" FT /protein_id="AEA76827.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1073..1477) FT /gene="AC3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LD32" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LD32" FT /protein_id="AEA76830.1" FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKIIEHHNRPFLRNHDI FT ITIQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY" FT gene complement(1218..1622) FT /gene="AC2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LCJ1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LCJ1" FT /protein_id="AEA76829.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLHCVVIFHRITL FT TPANGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRAPQPAILEEPRHHHHPDTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1525..2610) FT /gene="AC1" FT CDS complement(1525..2610) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LE87" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LE87" FT /protein_id="AEA76828.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR FT VCRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQYH FT NLCANLDRIFTPPLEVYVSPFCSSSFDQVPGELEEWAAENVLGAAARPLRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKAFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQAGQEGDPASSG" FT gene complement(2160..2459) FT /gene="AC4" FT CDS complement(2160..2459) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LDG5" FT /protein_id="AEA76831.1" FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRPMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2762 BP; 739 A; 564 C; 649 G; 810 T; 0 other; accggatggc cgcgattttt tttaccctgg accccacaac gcacgtgctg acaaagacat 60 gtgcaccaat taaaaacgtc cctcatagct taattatttt tggtcccccc tataaacttg 120 ggctccaagt agtgcactct taccaatgtg ggatccatta gtaaacgagt ttcctgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagctattag aaaatacata 240 tgctccagac actctgggct acgatttaat cagggatttg atctccgtta ttagggctaa 300 gaattatgtc caagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccttatgcca gccgtgctgc tgcccccact gtccgcgtca 420 caaaggccag agcatgggtg aacaggccca tgaacaggaa gcccaggatg tacaggatgt 480 acagaagccc agatgttcct aggggttgtg aaggcccatg taaggtccag tcttttgagt 540 ctagacacga tgtagttcat atagggaagg ttatgtgtat tagtgatgtt acccgtggta 600 ctgggttaac ccatagagta ggtaagcgtt tctgtgttaa gtctgtgtat gtattaggga 660 agatatggat ggatgagaat atcaagacta agaatcacac gaatagtgtg atgtttttcc 720 ttgtccgtga tcgtcgtcct gttgataaac cacaagattt tggagaggtg ttcaacatgt 780 ttgacaacga gcctagcact gccactgtga agaatatgca tagagatcgt tatcaggttt 840 tgaggaaatg gcacgcaacg gttactggtg gacagtacgc gtcgaaggaa caggcattag 900 ttaagaagtt cgttagggtt aataattatg ttgtgtataa ccagcaggaa gctggtaaat 960 atgagaatca tactgagaat gcgttgatgt tgtacatggc gtgtacccac gcctctaatc 1020 ctgtgtatgc tactttaaag atacggatct atttctatga ttcagtatcg aattaataaa 1080 gattgaattt tattatattt gaactttgta catgaattgt ttgtgctaag acattccata 1140 atacatggtt gacagctcta agtacattgt ttatactaat tacagcaaaa ttatttaaat 1200 acttatacac ttgggtccta aataccctta agaaatgacc agtctgaggc tgtaaggtcg 1260 tccagattcg gaaggttaga aaacatttgt gtatccccaa cgctttcctc aggttgtgat 1320 tgaaccgtat ctggatggtg atgatgtcgt ggttcctcaa gaatggccgg ttgtggtgct 1380 ctattatctt gaaatacagg ggatttgtta tctcccagat aaacacggaa ttctctgctt 1440 gagctgcagt gatgggttcc cctgtgcgtg aatccattag ccggtgtcag cgtaatgcga 1500 tgaaatatga caacgcagtg taggtcaacc cgacgacgcc gggtcccctt cttggccagc 1560 ctgtgctgca ctttgattgg aacctgagta gagtgggcct tcgagggtga tgaaggtcgc 1620 attctttaaa gcccaatttt tgagtgcgct atttttctct tcatccaaga acgctttata 1680 gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggctttccg tatttagtgt tggattgcca gtccctttgg gcccccatga attccttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccaggcgt cattactgta 1860 gacctttggg ctaaggtcga ggtgtccaca caaatagttg tgtggaccta gtgacctggc 1920 ccacattgtc ttgcccgttc tactatcgcc ctctatcact atactcacgg gtctcaatgg 1980 ccgcgcagcg gcaccgagaa cattctcggc agcccattct tcaagttccc ccggaacttg 2040 atcgaaagaa gaagaacaaa aaggagaaac ataaacctcc aacggaggcg taaaaatcct 2100 atctaaattt gcacataaat tatgatattg taatacaaaa tctttgggag ctttctccct 2160 taatatattg agggccgcag ctttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagactgc tgacctcctc tagctgatct tccatcgact tggaaaactc caaaatcaat 2280 gaagtctccg tttttttcca cataggcctt gacatctgac gagcttttag ctccctgaat 2340 gttcggatgg aaatgtgctg gcctggttgg ggaaacgagg tcgaagaatc tgttgttttg 2400 gcatttgaat ttaccttcga attgtatgag gacgtggaga tgaggttccc cattttcatg 2460 taattcgcga caaaccctga tgaacaattt attagtgggg gtgcttaggt tttgaagttg 2520 ggaaagtgct tcttctttag tgagggaaca ctgtggatat gttaagaaat aatttttagc 2580 atatatttga aaacgttttg gaggagccat gttgacttgg tcaatcggta ctcaacaaac 2640 ttggctatgc aatcggtgaa tggtactcaa tatatagtgt gagtaccaaa tggcatgttc 2700 gtaattttga aagcaaattc aaaattcaaa ttccgacaaa agcggccatc cgcactaata 2760 tt 2762 //