ID HM007113; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC HM007113; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus-India [India/New Delhi/Chilli/2009] clone DE pChNDK31 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus-India [India/New Delhi/Chilli/2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2739 RA Khuswaha N., Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 1b649193d92f1bdf5a55888b4dfc343a. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus-India FT [India/New Delhi/Chilli/2009]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/New Delhi/Chilli/2009" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /collection_date="Feb-2009" FT /clone="pChNDK31" FT /db_xref="taxon:1000683" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LD30" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LD30" FT /protein_id="AEA76820.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LDG1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H9LDG1" FT /protein_id="AEA76821.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSLYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LCJ0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LCJ0" FT /protein_id="AEA76824.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVMEQTIDVQTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LE85" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LE85" FT /protein_id="AEA76823.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCTYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFEARQQALPNTARHHQDSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LCR9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LCR9" FT /protein_id="AEA76822.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEEALSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH FT NLISNLDRIFQPRFEVYVFPFSISSFDRVPPELVDWASVNVVCAAARPFRPISIDIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LD31" FT /protein_id="AEA76825.1" FT /translation="MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2739 BP; 746 A; 596 C; 611 G; 786 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cctatttagt gcgtggggac caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attgttgcac gaatttccag aaagcgttca tggtctaagg tgcatgttag 180 ctgtaaaata tctccaagag atagaaaaga actattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caactcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtccggacgt gccaaggggc 480 tgtgaaggcc cttgcaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gcgttagtga tgttactcga ggaactggac tcacacatcg cgtagggaag 600 cgattttgtg tgaaatctct ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggtcc gtgaccgtcg tcctacagga 720 tcccctcaag attttgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gttttacgga aatggcatgc gactgtgacg 840 ggaggaacat atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtagttt acaatcaaca agaggccggc aagtatgaga atcatacgga aaatgcatta 960 atgttgtata tggcatgtac tcatgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt aacaaattaa taaatatcca gctttatatc atatgaagtt 1080 tgtacatcaa tcgtttgttc cattacatta tccaaaacat gataaactgc tcttattaca 1140 ttataaattc ctattacacc aagcatatcc aggtacctaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaatt gtatttgaat cttgatgatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgcttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatataatat gtacacccac agggaagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattctt ctcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaagcatc gagcccacat tgttttgccc gttctactat 1920 ccccctcaat gtctatgctt atgggcctaa aaggccgcgc agcggcacac acaacattga 1980 cactggccca atcgacaagt tctggaggaa ctctgtcgaa ggatgaaatt gaaaatggaa 2040 aaacgtaaac ctcaaaacga ggttggaaaa tgcgatccaa attgctaatt aaattatgaa 2100 actgcaaaac ataatccttt ggggctaatt ccttcaatac tttcaatgca tcttccttat 2160 tccccgtgtt aatcgcctta gcatatgcat cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatg 2280 ctttgacatc tgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgcagctc tctacagatc ttgatgaatt 2460 tcttcgcagt tggggtttct agggtttgca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg gtatgtgagg aaatagtttt tcgcatctat tctgaaacga cgtggcggag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaacttc ctctatgtaa ttggcgtctg 2640 gcgtcccata tataggtagg acgctaaatg gcagaattgt aattttgaaa agaaaattac 2700 tttaattcaa aatcctcata gcggccattc gttaatatt 2739 //