ID HM007111; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC HM007111; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Pepper leaf curl Bangladesh virus-India [India/Mograhat/2007] clone DE pChMogK4 segment DNA-A, complete sequence. XX KW . XX OS Pepper leaf curl Bangladesh virus-India [India/Mograhat/2007] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2755 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2755 RA Basu S., Singh A.K., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 1db07354a896fd1e1c42dcb8f23f19d3. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Pepper leaf curl Bangladesh virus-India FT [India/Mograhat/2007]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Mograhat/Chilli/2007" FT /mol_type="genomic DNA" FT /country="India:Mograhat" FT /collection_date="Nov-2007" FT /clone="pChMogK4" FT /db_xref="taxon:1000674" FT gene 148..504 FT /gene="AV2" FT CDS 148..504 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LCI8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LCI8" FT /protein_id="AEA76814.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQ FT EAQDVQDVQKPRCS" FT gene 308..1078 FT /gene="AV1" FT CDS 308..1078 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LD29" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LD29" FT /protein_id="AEA76815.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSVESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGTRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1075..1479) FT /gene="AC3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LE83" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LE83" FT /protein_id="AEA76818.1" FT /translation="MDSHTGEPITAAQAENGVFIWEITNPLYFKIIEHHHRPFLMNHDI FT ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQILNNFAVISLTN FT VIRAVDHVLWNVVAQTIYVQSSNITKFNIY" FT gene complement(1220..1624) FT /gene="AC2" FT CDS complement(1220..1624) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LCR8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LCR8" FT /protein_id="AEA76817.1" FT /translation="MRPSSPSKGHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHDHGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPPPAISNEPRHHNSPSTVQSQP FT EESVGDTQMFSNIPNLDDLTASDWSFLKGL" FT gene complement(1527..2612) FT /gene="AC1" FT CDS complement(1527..2612) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LDF9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LDF9" FT /protein_id="AEA76816.1" FT /translation="MTRTHQFQVKAKNIFLTYPKCPIPKEQMLEILKSINCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNTTQFHPNLQGAKSSSDVKSYI FT EKDGDYIDWGRFQIDGRSARGGQQTANDAAAEALNASSAEAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPLEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKDFMGAPRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPHSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASSR" FT gene complement(2198..2455) FT /gene="AC4" FT CDS complement(2198..2455) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LCI9" FT /protein_id="AEA76819.1" FT /translation="MGACISTRSSNSKVNPSSETLDISMSLTLITPPNSTQTSRELSPA FT PMSSPTSRRTVITSTGVAFRSMEDLLEEVNRQLMMLQQRP" XX SQ Sequence 2755 BP; 731 A; 588 C; 642 G; 794 T; 0 other; accggatggc cgcgattttt tttcaaagtg ggccccacaa cacacgtgct gacaaagaca 60 aatggaccaa ttacaaacgt ccctcgtagc ttaattattc aatggtcccc tatataaact 120 tggtccccaa gtagtgcaca cataccaatg tgggatccat tattaaacga gttccccgaa 180 accgttcacg gttttcggtg tatgctagcc gttaaatatc tccagctagt agaaaagacg 240 tattctccag atactttggg gtacgattta atccgcgatt taatatcagt tatcagggcc 300 agaaattatg tcgaagcgac cagcagatat aatcatttcc actcccgcct cgaaggtacg 360 ccgccgtctc aacttcgaca gcccatatac cagccgtgct gctgccccca ttgtccgcgt 420 caccaaagca aaagcatggg ccaacaggcc catgaacagg aagcccagga tgtacaggat 480 gtacagaagc ccagatgttc ctagaggatg tgaaggcccg tgtaaggtcc agtctgttga 540 gtctagacat gatgtccaac acattggtaa agtcatgtgt gttagtgatg ttactcgtgg 600 aactgggctg acccatcgag ttggtaccag gttttgtgtt aagtccgtct atgttctggg 660 caagatttgg atggatgaga acatcaagac taagaatcac acgaatagtg ttatgttttt 720 ccttgttaga gatcgtaggc ccgtagataa gccccaagac tttggtgagg tattcaacat 780 gtttgataat gagcccagta cggcgactgt gaagaacgtg catcgtgaca ggtatcaggt 840 gctcaggaag tggcatgcta ctgtgaccgg tggtcaatat gcatcgaagg agcaagctct 900 cgtgaagaag tttattaggg ttaacaatta tgttgtgtat aaccagcaag aagctggcaa 960 gtatgaaaac cattctgaga atgctctgat gttgtacatg gcgtgtactc atgcctctaa 1020 ccctgtgtat gctactttga agatacggat ctatttctat gattccgtaa caaattaata 1080 aatattgaat tttgttatgt ttgaactttg tacataaatt gtttgcgcta ctacattcca 1140 taatacatga tcgactgctc taattacatt ggttaaacta attacagcaa aattatttaa 1200 aatttgcaaa acttgggtcc taaagaccct taagaaatga ccagtctgag gctgtaaggt 1260 cgtccagatt cggaatgtta gaaaacattt gtgtatcccc aacgctttcc tcaggttgtg 1320 attgaactgt acttggactg ttatgatgtc gtggttcatt agaaatggcc ggtggtggtg 1380 ctcgattatc ttgaaataca ggggatttgt tatctcccag ataaacacgc cattctcggc 1440 ctgagctgca gtgatgggtt cccctgtgtg tgaatccatg gtcgtggcag cgtaatgcga 1500 tgaaatatga acagccgcag tctaggtcaa cgcgacgacg cctggtcccc ttcttggcta 1560 gcctgtgctg cactttgatt ggaacctgag tagagtggcc cttcgagggt gatgaaggtc 1620 gcattcttta aagcccaatt tttgagtgcg gaattctttt cctcatccaa gaactcttta 1680 tagctggaat ggggtcctgg attgcagagg aagatagcgg gaattccacc tttaatttga 1740 actggctttc cgtatttcgt atttgattgc cagtcccttg gggcccccat gaaatcctta 1800 aagtgcttta ggtagtgggg atcgacgtca tcaatgacgt tgtaccaggc gtcattactg 1860 tacaccttag ggctaaggtc tagatgacca cacaaatagt tatgtggacc caacgaccta 1920 gcccacatgg tcttccccgt gcgactatca ccctctatca caatactcat gggtcttaaa 1980 ggccgcgcag cggcactcac cacgttctcg gcagcccatt cctcaagttc ctctggaact 2040 tgatcaaaag aagaggaaga aaaaggagaa acataaacct ccaacggagg tgtaaaaatc 2100 ctatctaaat tacattttaa attatggtat tgaaaaataa aatcctttgg gagtttttcc 2160 cgtattattg ctaacgccgc ttcagccgaa ctcgcattta aggcctctgc tgcagcatca 2220 ttagctgtct gttgacctcc tcgagcagat cttccatcga tctgaaagcg accccagtcg 2280 atgtaatcac cgtccttctc gatgtaggac ttgacatcgg agctggactt agctccctgg 2340 aggtttgggt ggaattgggt ggtgttatta gggtgagtga catcgaaatg tctagggttt 2400 ctgaactggg atttaccttt gaattggatg agcgcgtgga tatgcaagct cccatcttgg 2460 tgtttttcct gtgaaactct gataaataat ttatctgaag ggcaatttat agatttcaga 2520 atttctagca tttgttcttt gggtattggg cattttggat aagtgaggaa gatatttttg 2580 gctttaactt ggaattggtg tgtacgtgtc atttcgaatt gggagctctt caaaactcta 2640 cggaatgggg tgctttgggt gcctatttat accgagcacc caaatggcat ttacgcaatt 2700 acggtgaaaa ttccaaaatt ttcccgctcc aaaaagcggc catccgtata atatt 2755 //